View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_50 (Length: 223)
Name: NF19198_high_50
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 7999828 - 8000016
Alignment:
| Q |
16 |
attattctattcattaacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaa |
115 |
Q |
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| T |
7999828 |
attattctattcattcacttttttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaa |
7999927 |
T |
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| Q |
116 |
tgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaagct |
204 |
Q |
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| T |
7999928 |
tgtccttttggagccatcgaaattatcaacttgccaaaaaatttggacaaagataccactcatagatatggtcctaatacctttaagct |
8000016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 51514984 - 51515103
Alignment:
| Q |
85 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatat |
184 |
Q |
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| T |
51514984 |
ggtttatgtgatgatgatattgctgtagaaatgtccttttgaagctatccaaattatcaacttgccaaaggatttggacaaagataccactcatagatac |
51515083 |
T |
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| Q |
185 |
ggtcctaatacctttaagct |
204 |
Q |
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| T |
51515084 |
ggtcctaatacttttaagct |
51515103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 7908708 - 7908551
Alignment:
| Q |
37 |
tttaaagatgctcgcttttgttaatacttaataatgaataatgggtttggtttatgtgatgatgatattgctgtagaaatgtccttttggagccatcgaa |
136 |
Q |
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| T |
7908708 |
tttaaagatgctcgcttttgttaataat-aataac-aataatgggtttg-tttatgtgatggtgattttgctgcagagatgtccttttggagccatcgaa |
7908612 |
T |
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| Q |
137 |
attatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaataccttta |
200 |
Q |
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| T |
7908611 |
attatcaac---actaaggattttaacaaagatatcactcatagatatggtcctaataccttta |
7908551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 1304493 - 1304392
Alignment:
| Q |
103 |
attgctgtagaaatgtccttttggagccatcgaaattatcaacttgccaaagaatttggacaaagataccactcatagatatggtcctaatacctttaag |
202 |
Q |
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|||| |||||||||||||||||| ||| || | |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
1304493 |
attggtgtagaaatgtccttttgaagcaattaagattatcaacttgccggagaatttggacaaagaaacaactcatagatatggtcctaatacttttaag |
1304394 |
T |
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| Q |
203 |
ct |
204 |
Q |
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|| |
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| T |
1304393 |
ct |
1304392 |
T |
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