View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_52 (Length: 217)
Name: NF19198_high_52
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 42332314 - 42332486
Alignment:
| Q |
18 |
atatgaatgatcggaagagtcgttaatccaagaccacctttctccctcatgagtcaaggttacaccaccaatgagcttcatcaaattttccaacaaaagt |
117 |
Q |
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| T |
42332314 |
atatgaatgattggaagagtcgttcacccaagaccacctttctccctcaggagtcaaggttacaccacca---agcttcatcaatttttccaacaaaagt |
42332410 |
T |
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| Q |
118 |
tgatcccagatagaaagaaagaggtctcctccaagagagcattcaaatccacctcttccccaaaacctaaatttcttacccaaac |
202 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42332411 |
tgatccca---------aaagaggtctcctccaagagagcattcaaatccacctcttccccaaaacctaaatttcttacccaaac |
42332486 |
T |
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