View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_high_7 (Length: 485)
Name: NF19198_high_7
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 28402842 - 28403317
Alignment:
| Q |
1 |
catataaataagggacatacatcaaccatgaaattaaatgcaatttcttctgtacaatatatatgataaaaatagccatgtagaaagtaaacaacaaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28402842 |
catataaataagggacatacatcaaccatgaaattaaatgcaatatcttctgtacaatatatatgataaaaatagccatgtagaaagtaaacaacaaatc |
28402941 |
T |
|
| Q |
101 |
aaattggttcatagttttctgttttgagtcccttgtagaaagagcgcttgtcaaatacatagaacttattgacacatttcgtaaaagaaaaactttacac |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
28402942 |
aaattggttcatagttttctgttttgagtcctttgtagaaagagcgcttgtcaaatacagagaacttattgacacgtttcgtaaaagaaaaactttacac |
28403041 |
T |
|
| Q |
201 |
attttcaaaaactttacaaacatgcttgagtttagttagcacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagtta----a |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28403042 |
attttcaaaaactttacaaacatgcttgagtttagttagcacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaattta |
28403141 |
T |
|
| Q |
297 |
tttattaaataattagataaatgttacattgacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaa |
396 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403142 |
tttattaaataattagataaatgttacattaacaacgtaatatagttttcttttttaaggacaacgcaatatagttgaaaataatgcaaaacatgtgtaa |
28403241 |
T |
|
| Q |
397 |
caaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgct |
472 |
Q |
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| T |
28403242 |
caaattaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttcttcaagaatatctctgaatctctgtgct |
28403317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 19375049 - 19375190
Alignment:
| Q |
91 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaaagagcgcttgtcaaatacatagaacttattgacacatttcgtaaaagaaa |
190 |
Q |
| |
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|||||||||| |||||||||||| ||||||| ||| ||| |||| ||||||||| |||||||||| ||||||| || ||||||||||| |||||| ||| |
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| T |
19375049 |
acaacaaatccaattggttcataattttctggtttaagttccttatagaaagagtccttgtcaaatgcatagaatttgttgacacatttagtaaaaaaaa |
19375148 |
T |
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| Q |
191 |
aa----ctttacacattttcaaaaactttacaaacatgcttg |
228 |
Q |
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| T |
19375149 |
aatcttctttacacattttcaaaaactttacaaacatgcttg |
19375190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 19374953 - 19375013
Alignment:
| Q |
31 |
aaattaaatgcaatttcttctgtacaatatatatgataaaaatagccatgtagaaagtaaaca |
93 |
Q |
| |
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||||||||||||||||| | ||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
19374953 |
aaattaaatgcaatttcctaagtacagtata--tgataaaaatagccctgtagaaagtaaaca |
19375013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 32835538 - 32835438
Alignment:
| Q |
240 |
cacttaagctaaatattttgccaaaaaagaaagtaattcatctaggcaagtagttaatttattaaataattagataaatgttacattgacaacgtaatat |
339 |
Q |
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|||||||||| |||||||||||||||||||||| |||||| |||| ||| |||||| |||||||||||||||| |||| |||| ||| |||||| ||||| |
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| T |
32835538 |
cacttaagcttaatattttgccaaaaaagaaagcaattcagctagacaaatagttactttattaaataattagctaaaagttaaattaacaacgcaatat |
32835439 |
T |
|
| Q |
340 |
a |
340 |
Q |
| |
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| |
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| T |
32835438 |
a |
32835438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 32835615 - 32835548
Alignment:
| Q |
91 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaaagagcgcttgtcaaatac |
158 |
Q |
| |
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||||||||||||||||||| ||| || |||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
32835615 |
acaacaaatcaaattggttaataattgtctgttttgagtcccttggagaaagagcccttgtcatatac |
32835548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 32841799 - 32841723
Alignment:
| Q |
91 |
acaacaaatcaaattggttcatagttttctgttttgagtcccttgtagaa--agagcgcttgtcaaatacatagaac |
165 |
Q |
| |
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|||| |||||||||||||||||| || ||| ||||||||| ||| |||| ||||| ||||||||||||||||||| |
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| T |
32841799 |
acaagaaatcaaattggttcataattgtctattttgagtctcttacagaaagagagcccttgtcaaatacatagaac |
32841723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 32835450 - 32835363
Alignment:
| Q |
357 |
acaacgcaatatagttgaaaataatgcaaaacatgtgtaacaaatgaaggaaaaacaaatcaaagtagttaaaccaatttgaatcttc |
444 |
Q |
| |
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||||||||||||| || ||||| || ||||| ||||||||||||| ||||||||| ||| ||| || || | |||||||||| |||| |
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| T |
32835450 |
acaacgcaatatattttaaaattattcaaaatatgtgtaacaaattaaggaaaaaataatgaaaatacttgagccaatttgaaacttc |
32835363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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