View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_1 (Length: 1038)
Name: NF19198_low_1
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 337 - 896
Target Start/End: Original strand, 12455764 - 12456324
Alignment:
| Q |
337 |
tgtattcgtacacactccaacactctgagtcaactagaatttgaggtgagtgagagatatgatgaatagtgggcaccttgcttccggtggaaggaaagtc |
436 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455764 |
tgtattcgtacacactccaacactctgagtcaacaagaatttgaggtgagtgagagatatgatgaatagtgggcaccttgcttccggtggaaggaaagtc |
12455863 |
T |
|
| Q |
437 |
ctaatacaactgaactgccgaggtaaaatggtgggaaagtctgttgagaaagttataagtaggaatgtatatcgccgtgatatgcgaatcaatgtttagt |
536 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12455864 |
ctaatacaattgaactgcccaggtaaaatggtgggaaagtctgttgagaaagttataagtcggaatgtatatcgccgtgatatgcgaatcaatgtttagt |
12455963 |
T |
|
| Q |
537 |
tgagatcatgctgtcgttgatcttcagtgacgttttgctca-ggggttgggtctgtagtgcagaaatctagttcggatgggtcatgggctagtccgaaac |
635 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455964 |
tgagatcatgcagtcgttgatcttcagtgacgttttgctcatggagttgggtctgtagtgcagaaatctagttcggatgggtcatgggctagtccgaaac |
12456063 |
T |
|
| Q |
636 |
atttataatccaacattaatgaaaggaaactaaaatagaaaaaatggggttgcagtgaaactgttttgttaagggacactaatatcagtgaaacatttgt |
735 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12456064 |
atttataatccaacatcaatgaaaggaaactaaaatagaaaaaatagggttgcagtgaaactgttttggtaagggacactaatatcagtgaaacatttgt |
12456163 |
T |
|
| Q |
736 |
aatcatagctgcttccaaattccaatgaagctaacattacagc-aatcagtgtacaatttcattatgatgccttctaagggacaccaatatccttcaaag |
834 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
12456164 |
aatcgtagctgcttccaaattccaatgaagctaacattacagcaaatcagtgtacaatttcattatgatgccttctaagagacactaatatccttcaaag |
12456263 |
T |
|
| Q |
835 |
aaattctagaatttgcatgaaaattacaaggatggaaaaggatatttgaagaaattagctca |
896 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12456264 |
aaattctagaatttgcatgaaaattacaaggatggaaaaggata-ttgaagaaattagctca |
12456324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 12455174 - 12455499
Alignment:
| Q |
14 |
gcacagagccttagtttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacacggatacatattcgac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12455174 |
gcacagagccttagtttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacccggatacatattcgac |
12455273 |
T |
|
| Q |
114 |
atcggaaaactcctaatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455274 |
atcggaaaactcctaatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactg |
12455373 |
T |
|
| Q |
214 |
tggttgaatgtgaattggtctgctgataaccttcatcgatcatagtggagtctgcaattttattgtgatatgtaaagtctctcatatacagtaaactaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455374 |
tggttgaatgtgaattggtctgctgataaccttcattgatcatagtggagtctgcaattttattgtgatatgtaaagtctctcatatacagtaaactaat |
12455473 |
T |
|
| Q |
314 |
atgtgaatggtacaatttatagatgt |
339 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
12455474 |
atgtgaatggtacaatttatagatgt |
12455499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 896 - 1022
Target Start/End: Original strand, 12456373 - 12456499
Alignment:
| Q |
896 |
acattgattgcttccattcatacagtttaaataaaattccttaaggctcaaagagagcttacagaggtacctatagaagtcctgacatcggtaacaagag |
995 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
12456373 |
acattgattgtttccattcatacagtttaaataaaattccttaaggctcaaagagagcttagagaggtacttacagaagtcctgacatcggtaacaagag |
12456472 |
T |
|
| Q |
996 |
ttgaatccacaatcttgtagatgaatc |
1022 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
12456473 |
ttgaatccacaatcttgtagatgaatc |
12456499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 5654557 - 5654501
Alignment:
| Q |
100 |
gatacatattcgacatcggaaaactcctaatccgaggagtatttgtgcttcatagtc |
156 |
Q |
| |
|
||||| ||| ||||| ||||| || |||||||||| ||||||||||||||||||||| |
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|
| T |
5654557 |
gatacgtatccgacaccggaatacgcctaatccgaagagtatttgtgcttcatagtc |
5654501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 30621782 - 30621753
Alignment:
| Q |
125 |
cctaatccgaggagtatttgtgcttcatag |
154 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
30621782 |
cctaatccgaggagtatttgtgcttcatag |
30621753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 21211381 - 21211415
Alignment:
| Q |
122 |
actcctaatccgaggagtatttgtgcttcatagtc |
156 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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|
| T |
21211381 |
actcctaatccgaggagtgtttgtgcttcatagtc |
21211415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 11596427 - 11596398
Alignment:
| Q |
125 |
cctaatccgaggagtatttgtgcttcatag |
154 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
11596427 |
cctaatccgaggagtatttgtgcttcatag |
11596398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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