View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19198_low_11 (Length: 439)
Name: NF19198_low_11
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 51909693 - 51909264
Alignment:
| Q |
11 |
cacagataactaatctaaagcatgcaagtttcagggcaaacaggctgtgtggagaaataccacaaactagaccattcaacatctttccaccagttgctta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909693 |
cacagataactaatctaaagcatgcaagtttcagggcaaacaggctgtgtggagaaataccacaaactagaccattcaacatctttccaccagttgctta |
51909594 |
T |
|
| Q |
111 |
tgcccacaacttgtgcttatgtggcaaacctttggggccatgcaagggatagaaataagggacaattggtcagtgagatgctgactaaactataatatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909593 |
tgcccacaacttgtgcttatgtggcaaacctttggggccatgcaagggatagaaataagggacaattggtcagtgagatgctgactaaactataatatat |
51909494 |
T |
|
| Q |
211 |
tttcatgccttatgaccattgttacacgagatagattaggctccacctatattaattatctttcatttccagctagagcagcacaatgcttattgtttag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909493 |
tttcatgccttatgaccattgttacacgagatagattaggctccacctatattaattatctttcatttccagctagagcagcacaatgcttattgtttag |
51909394 |
T |
|
| Q |
311 |
ttcaatttattcacaattcaatatta-tttgaataataatgtattgatttttatttttacatgttatatttgaagtaaagatagtcctacccatgtttga |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51909393 |
ttcaatttattcacaattcaatattattttgaataataatgtattgatttttatttttacatgttatatttgaagtaaagatagtcctacccatgtttga |
51909294 |
T |
|
| Q |
410 |
ttcatactttgtataatgcgtggtcacact |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51909293 |
ttcatactttgtataatgcgtggtcacact |
51909264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University