View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_12 (Length: 439)
Name: NF19198_low_12
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 34779730 - 34779308
Alignment:
| Q |
2 |
tactgcatcagtgtacccatcccctaccactagttttgtatttagtccaagagagatgtggctcattttttcttaaacaaatacttttcaagactccagt |
101 |
Q |
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| T |
34779730 |
tactgcatcagtgtaccgatcccctaccactagttttgtatttagtccaagagagatgtggctcattttttcttaaacaaatacttttcaagactccagt |
34779631 |
T |
|
| Q |
102 |
tacgactcgattgagaaccccccggtcaaatataatctgtgacctacccataaattggcttcgcaacattgcatccagacacatgcactttgaattactc |
201 |
Q |
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| T |
34779630 |
tgcgactcgattgagaaccccccggtcaaatataatctgtgacctacccataaattggcttcgcaacattgcatccatacacatgcactttgaattactc |
34779531 |
T |
|
| Q |
202 |
tatcgattagtgacctgcccataaattttaaatagtggaacaccatgtgttaagtctggtgttgtatgagagatcaactggaaaaatgtttataattgga |
301 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
34779530 |
tatcgattagtgacctacccataaattttaaatagtggaacgccatgtgttaagtctggtgttgtatgagagatgaactgaaaaaatgtttataattgga |
34779431 |
T |
|
| Q |
302 |
gtaatcatgagcatataacttgatattgttaagnnnnnnnnnggtgtaacttgatattgtaaagttgaatgaggtccaaccataaattttaagatcatat |
401 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34779430 |
gtaatcatgagcatataacttgatattgtaaag-ttttttttggtgtaacttgatattgtaaagttgaatgaggtccaaccataaattttaagatcatat |
34779332 |
T |
|
| Q |
402 |
atataaattcatag-gttaaatat |
424 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
34779331 |
atataaattcatagcgttaaatat |
34779308 |
T |
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