View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_17 (Length: 400)
Name: NF19198_low_17
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 97 - 385
Target Start/End: Complemental strand, 37387617 - 37387338
Alignment:
| Q |
97 |
taaaggcggtaaacattttagattatgtatttgaaacctcctatatttaatttaagtttgtctaaaacctaacagaaattaatcacctttatcactttcc |
196 |
Q |
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| T |
37387617 |
taaaggcggtaaacattttagattatgtatttgaaacctcctatatttaatttaagtttgtctaaaacctaacagaaattcatcacctttatcactttcc |
37387518 |
T |
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| Q |
197 |
actctacacacctccaaatacaccccatttttaacgaacacgtgatttgaagacgcaatctactttgatgtcatacacatgttgtataatctgaaaaagg |
296 |
Q |
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| T |
37387517 |
actctacacacctccaaatacaccccatttttaacgaacacgtgatttgaagacgcaatctactttgatgtcattcacatgttgtat---------aagg |
37387427 |
T |
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| Q |
297 |
tgatgaacttctttcaataggaatatcacaacagatccaaatccctcacaatgaaaccaatcaaattcatattgtcacttttacttatg |
385 |
Q |
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| T |
37387426 |
tgatgaacttctttcaataggaatatcacaacagatccaaatccctcacaatgaaaccaatcaaattcatattgtcacttttacttatg |
37387338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 37388141 - 37388079
Alignment:
| Q |
19 |
ggaggggcactggtgcctctaggagggctcctatggccctttgggaaggttcctggatcctta |
81 |
Q |
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| T |
37388141 |
ggaggggcactggtgcctctaggagggctcctatggccctttaggaaggttcctgaatcctta |
37388079 |
T |
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