View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_19 (Length: 387)
Name: NF19198_low_19
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 24998807 - 24998480
Alignment:
| Q |
23 |
aaaactgagggactccaagaaaatcaaagccagcaggaaactgcaaaatcaactcaacttattagaactctcaccaacaacaccaatttcacctccttcc |
122 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24998807 |
aaaattgagggactccaagaaaatcaaagccaacaggaagctgcaaaatcaaatcaacttattagaactctcaacaacaacaccaatttcacctccttcc |
24998708 |
T |
|
| Q |
123 |
ttttctccatcaccacagaatttggataatgtcgttccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggtta |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998707 |
ttttctccatcaccacagaatttggataatgtcgtaccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggtta |
24998608 |
T |
|
| Q |
223 |
cacccgtttttactgaacacacagacacttacctgttttaattagatttacatgttatagtatcataattcatttatctcttttgtatttttattattca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998607 |
cacccgtttttactgaacacacagacacttacctgttttaattagatttacatgttatagtatcataattcatttatctcttttgtatttttattattca |
24998508 |
T |
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| Q |
323 |
aagtgattatcgattcatcatatataca |
350 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
24998507 |
aagtgattatcgattcatcatctataca |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 25002746 - 25002975
Alignment:
| Q |
18 |
cttgcaaaactgagggactccaagaaaatcaaagccagcaggaaactgcaaaatcaactcaacttattagaactctcaccaacaacaccaatttcacctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | | |||||| || || |
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| T |
25002746 |
cttgcaaaactgagggactccaagaaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaactt---ctt |
25002842 |
T |
|
| Q |
118 |
cttccttttctccatcaccacagaatttggataatgtcgttccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgc |
217 |
Q |
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|| ||| ||||||| ||| ||||||||||||||| || ||||| |||||| | || ||| ||||||||||||| ||||| ||||| |||||||| ||||| |
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| T |
25002843 |
ctccctcttctccaccacaacagaatttggataacgttgttccatgcttcaacccaaccattaaccgccctcgatgcctcgctagaaagaaacttttcgc |
25002942 |
T |
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| Q |
218 |
ggttacacccgtttttactgaacacacagacac |
250 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
25002943 |
tgttacacctgtttttactgaacacacagacac |
25002975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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