View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_20 (Length: 381)
Name: NF19198_low_20
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 3567114 - 3566752
Alignment:
| Q |
1 |
atcacattaaaactccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagcaaaaagtatgttat |
100 |
Q |
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| T |
3567114 |
atcacattaaaaatccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagcaaaaagtatgttat |
3567015 |
T |
|
| Q |
101 |
taacttgaacatctagcaaaagagattagttgtc-agaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaaccatgattgattag |
199 |
Q |
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| T |
3567014 |
taacttgaacatctagcaaaagagattagttgtctagaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaaccatgactgattag |
3566915 |
T |
|
| Q |
200 |
tgatgtctctattcaaccttctttatgtgcttatattgattcccttaccattggcccaagtgtattcaacaccattggcaggcaaatgaactaaagcatt |
299 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566914 |
tgatgtctctatccaaccttctttatgtgcttatattgattcccttaccattggctcaagtgtattcaacaccattggcaggcaaatgaactaaagcatt |
3566815 |
T |
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| Q |
300 |
tctgtcgatccaagacttaaactcttccataggtgacctcgtaggagtgattcttcacctatg |
362 |
Q |
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| T |
3566814 |
tctgtcgatacaagacttaaactcttccataggtgacctggtaggagtgattcttcacctatg |
3566752 |
T |
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