View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_23 (Length: 348)
Name: NF19198_low_23
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 47282951 - 47282616
Alignment:
| Q |
7 |
ttatcaactcatactcaactagttgaaactcaaatgagtctcactaaatcatgtaggtctcacatgcatttagtgttaatcatttgtatttcaaatcaat |
106 |
Q |
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| T |
47282951 |
ttatcaactcatactcaactagttgaaactcaaatgagtctcactaaatcatgcaggtctcacatgcatttagtgttaatcatttgtatttcaaatcaat |
47282852 |
T |
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| Q |
107 |
gattttttcattaagagattaaaatttaaatatgtatatgataacataaaggctaattatatgtttagtcctttaattaatatcctagttccattttgat |
206 |
Q |
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| T |
47282851 |
gattttttcattaagagattaaaatttaaatatgtatatgataacataaaggctaattatatgtttagtcctttaattaatatcctagttccattttgat |
47282752 |
T |
|
| Q |
207 |
ctcataacaaatatttctaatgttttggtccttcaactaagtttttgttagccaacttgtcttctcgcctgttagttgagagacaaaattagttatgaaa |
306 |
Q |
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| T |
47282751 |
ctcataacaaatatttcttatgttttggtccttcaactaagtttttgttagccaacttgtcttctcgcctgttagttgagagacaaaattagttatgaaa |
47282652 |
T |
|
| Q |
307 |
catagtatattaataatttttgtatataattttctt |
342 |
Q |
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| T |
47282651 |
catagtatattaataatttttgtatataattttctt |
47282616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 47276825 - 47276782
Alignment:
| Q |
119 |
aagagattaaaatttaaatatgtatatgataacataaaggctaa |
162 |
Q |
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| T |
47276825 |
aagagattaaaatttaaatatgtatatgataaaataaaagctaa |
47276782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 48093152 - 48093099
Alignment:
| Q |
28 |
gttgaaactcaaatgagtctcactaaatcatgtaggtctcacatgcatttagtg |
81 |
Q |
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||||||| ||||||| ||||| |||||||||||||||| ||||| |||||||| |
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| T |
48093152 |
gttgaaattcaaatgggtctccctaaatcatgtaggtcccacataaatttagtg |
48093099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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