View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_29 (Length: 292)
Name: NF19198_low_29
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 6623498 - 6623762
Alignment:
| Q |
18 |
ccattatatagatgggaggaaggtgaaggatctgaatgttgtacgtttttcagaaaccgatgctctaataacattgaagcagttggccgctctgctggat |
117 |
Q |
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| T |
6623498 |
ccattatatagatgggaggaaggtgaaggatctgaatgttgtacgtttttcagaaaccgatgctctaataacattgaagcagttggccgctctgctggat |
6623597 |
T |
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| Q |
118 |
ttcttataaagcaaagcctcaagaaatctttagcttctggtgacaatgtttcaggtataggaggggtatccttcattaccttaaacatagctgcagcctg |
217 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623598 |
ttcttacaaagcaaagcctcaagaaatctttaccttctgttgacaatgtttcaggtataggaggggtatccttcattaccttaaacatagctgcagcctg |
6623697 |
T |
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| Q |
218 |
cataattagatcaaaattcacacctatttaacatatgaaggacatgtatacatacagcatctctg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6623698 |
cataattagatcaaaattcacacctatttaacatatgaaggacatgtatacatacaacacctctg |
6623762 |
T |
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