View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19198_low_3 (Length: 741)

Name: NF19198_low_3
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19198_low_3
NF19198_low_3
[»] chr4 (3 HSPs)
chr4 (458-710)||(49857898-49858152)
chr4 (275-327)||(10307465-10307517)
chr4 (265-317)||(47576257-47576309)
[»] chr1 (1 HSPs)
chr1 (304-353)||(27503973-27504022)
[»] chr8 (2 HSPs)
chr8 (507-593)||(32793371-32793457)
chr8 (301-351)||(41543992-41544042)
[»] chr6 (1 HSPs)
chr6 (393-643)||(26269417-26269664)
[»] chr7 (1 HSPs)
chr7 (595-644)||(43634832-43634881)
[»] chr3 (1 HSPs)
chr3 (598-657)||(32077739-32077798)
[»] chr2 (1 HSPs)
chr2 (305-348)||(2567983-2568026)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 458 - 710
Target Start/End: Complemental strand, 49858152 - 49857898
Alignment:
Q  458 cctatgttcctatgcaaattaacgttatgaaatatttatttcacctta-tagatccggtatataccttttccttacaaaaaaggttgattccaaagatta 556  Q
    |||||||| | ||||||||||  |||||||||||||| ||| | |||| ||||||    || |||||||  ||| ||| |||| ||||| ||  | ||||    
T  49858152 cctatgttgccatgcaaattattgttatgaaatatttcttttatcttaatagatctaccatctacctttgtctttcaacaaagattgatacctcaaatta 49858053  T
Q  557 tgaattataacattataattattcaattcctttgaaag-gtttgattataaccaaatgattgtttgatcttgaaatgcatatatcaattgtcaccttgat 655  Q
    ||||||||||  ||||  || ||||||||| || |||  ||||||||||||| |||||||||||| ||| || ||||  |||||||||||||| ||| ||    
T  49858052 tgaattataatgttatggttgttcaattcccttaaaaatgtttgattataactaaatgattgtttaatcatgtaatgtctatatcaattgtcatcttaat 49857953  T
Q  656 taacgaggttcaaatatcaattcctataattcatataaacatatgattatttggt 710  Q
    |  | | | ||||| |||||| || |||||||||||||||| ||| |||||||||    
T  49857952 tggccaagctcaaacatcaatgcccataattcatataaacaaatggttatttggt 49857898  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 10307465 - 10307517
Alignment:
Q  275 gtaagaaaaatattgatctcacatgaacttttgaatctcaaggctaccttttt 327  Q
    |||| |||||||| |||||| || ||||||||||||||||||||||| |||||    
T  10307465 gtaataaaaatatcgatctcgcaagaacttttgaatctcaaggctactttttt 10307517  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 47576309 - 47576257
Alignment:
Q  265 ttttatcgttgtaagaaaaatattgatctcacatgaacttttgaatctcaagg 317  Q
    ||||| ||| |||| |||||||||||||||||| |||||| ||||||||||||    
T  47576309 ttttaccgtcgtaaaaaaaatattgatctcacaagaacttatgaatctcaagg 47576257  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 27503973 - 27504022
Alignment:
Q  304 tttgaatctcaaggctacctttttctcctaaatatacaattaaaaagtat 353  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  27503973 tttgaatctcaaggctacctttttctcctaagtatgcaattaaaaagtat 27504022  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 593
Target Start/End: Complemental strand, 32793457 - 32793371
Alignment:
Q  507 agatccggtatataccttttccttacaaaaaaggttgattccaaagattatgaattataacattataattattcaattcctttgaaa 593  Q
    |||| |||| ||| |||||||||| ||| |||| ||||||   | |||||||||||||||  ||| |||||||||||||||||||||    
T  32793457 agattcggtgtatgccttttcctttcaacaaagattgattgatatgattatgaattataatgttagaattattcaattcctttgaaa 32793371  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 41544042 - 41543992
Alignment:
Q  301 acttttgaatctcaaggctacctttttctcctaaatatacaattaaaaagt 351  Q
    |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  41544042 acttgtgaatcttaaggctatctttttctcctaagtatacaattaaaaagt 41543992  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 643
Target Start/End: Original strand, 26269417 - 26269664
Alignment:
Q  393 aatatgataaacataccttaggattgtgggtttccatcactagattgattttccaatctcaagtccctatgttcctatgcaaattaacgttatgaaatat 492  Q
    ||||| ||||| ||| |||| |||| ||  |||| ||||| |||| || ||||||||||||||||| || ||| |||| ||||||||     |||||| |    
T  26269417 aatataataaaaatatcttatgattttgaatttcaatcacaagatagaatttccaatctcaagtccttaagttgctatacaaattaagaccttgaaatct 26269516  T
Q  493 ttatttcaccttatagatccggtatataccttttccttacaaaaaaggttgattccaaagattatgaattataacattataattattcaattcctttgaa 592  Q
    ||  | || ||||||||||||||     ||||| | || ||  |||||||||| |  || ||| | ||||||||  ||||||||||||| ||||||| ||    
T  26269517 ttgatgcatcttatagatccggtg----cctttgcttttcacgaaaggttgatgcataatattttaaattataatgttataattattcagttcctttaaa 26269612  T
Q  593 ag-gtttgattataaccaaatgattgtttgatcttgaaatgcatatatcaat 643  Q
    |  |||| ||||||||||||||||| |||||||||  ||| | |||||||||    
T  26269613 aatgttttattataaccaaatgattttttgatcttctaatccctatatcaat 26269664  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 43634832 - 43634881
Alignment:
Q  595 gtttgattataaccaaatgattgtttgatcttgaaatgcatatatcaatt 644  Q
    |||| |||||||||||| ||||||||||||||| ||||| ||||||||||    
T  43634832 gtttaattataaccaaaggattgtttgatcttgtaatgcttatatcaatt 43634881  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 657
Target Start/End: Original strand, 32077739 - 32077798
Alignment:
Q  598 tgattataaccaaatgattgtttgatcttgaaatgcatatatcaattgtcaccttgatta 657  Q
    |||||||||||| |||||||||||||| || ||||| |||||||||| |||  |||||||    
T  32077739 tgattataaccatatgattgtttgatcgtgtaatgcttatatcaattatcattttgatta 32077798  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 2568026 - 2567983
Alignment:
Q  305 ttgaatctcaaggctacctttttctcctaaatatacaattaaaa 348  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||    
T  2568026 ttgagtctcaaggctatctttttctcctaaatatgcaattaaaa 2567983  T

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