View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_38 (Length: 250)
Name: NF19198_low_38
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 49035739 - 49035974
Alignment:
| Q |
15 |
tattgtagttctaccagagataatggttccacttattggtacacctcaggcatgttcctttttcttacttaatctttagtaatttctcgaatttgtttca |
114 |
Q |
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| T |
49035739 |
tattgtagttctaccagagataatggttccacttattggtacacctcaggcatgttcctttttcttacttaatctttagtaatttctcgaatttgtttca |
49035838 |
T |
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| Q |
115 |
gatatatcatatatgcataagattatgacgaaaagttcagaatgttctctctcgaaatataacatgaagaacaatttttggttcgatcttaataaaaatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035839 |
gatatatcatatatgcataagattatgacgaaaaattcagaatgttctctctcgaaatataacatgaagaacaatttttggttcgatcttaataaaaatc |
49035938 |
T |
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| Q |
215 |
ttgacataattattatacaagcccaatactctttaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49035939 |
ttgacataattattatacaagcccaatactctttaa |
49035974 |
T |
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