View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19198_low_4 (Length: 688)

Name: NF19198_low_4
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19198_low_4
NF19198_low_4
[»] chr1 (14 HSPs)
chr1 (166-668)||(34478826-34479344)
chr1 (1-50)||(34479462-34479511)
chr1 (604-659)||(9955100-9955155)
chr1 (604-659)||(25146833-25146888)
chr1 (1-48)||(50377301-50377348)
chr1 (600-659)||(9327280-9327339)
chr1 (1-48)||(10776533-10776580)
chr1 (1-48)||(21686846-21686893)
chr1 (604-659)||(23528665-23528720)
chr1 (188-274)||(34483910-34483996)
chr1 (595-659)||(12513281-12513345)
chr1 (613-665)||(18891747-18891799)
chr1 (202-274)||(34491896-34491968)
chr1 (4-48)||(47132873-47132917)
[»] chr7 (9 HSPs)
chr7 (202-276)||(3333087-3333161)
chr7 (604-659)||(5058538-5058593)
chr7 (204-273)||(3313984-3314053)
chr7 (604-657)||(11326395-11326448)
chr7 (604-659)||(8346598-8346653)
chr7 (604-659)||(26281374-26281429)
chr7 (1-48)||(39328862-39328909)
chr7 (1-36)||(45349871-45349906)
chr7 (604-652)||(44944921-44944969)
[»] chr4 (7 HSPs)
chr4 (215-273)||(9596180-9596238)
chr4 (604-655)||(4156772-4156823)
chr4 (1-45)||(37030254-37030298)
chr4 (604-659)||(5362028-5362083)
chr4 (600-659)||(9770117-9770176)
chr4 (1-48)||(19853584-19853631)
chr4 (4-46)||(52944300-52944342)
[»] chr2 (5 HSPs)
chr2 (604-659)||(1404792-1404847)
chr2 (610-656)||(1690830-1690876)
chr2 (604-659)||(31238042-31238097)
chr2 (604-659)||(31578014-31578069)
chr2 (600-665)||(15516618-15516683)
[»] chr6 (13 HSPs)
chr6 (604-658)||(26053362-26053416)
chr6 (604-658)||(26073415-26073469)
chr6 (604-659)||(6943525-6943580)
chr6 (604-659)||(30912477-30912532)
chr6 (604-654)||(7223528-7223578)
chr6 (604-665)||(2912306-2912367)
chr6 (1-48)||(13546735-13546782)
chr6 (604-655)||(15528179-15528230)
chr6 (600-659)||(17250062-17250121)
chr6 (1-48)||(23128589-23128636)
chr6 (17-48)||(28981145-28981176)
chr6 (604-658)||(10509089-10509143)
chr6 (610-659)||(27233342-27233391)
[»] chr8 (8 HSPs)
chr8 (604-659)||(5922058-5922113)
chr8 (595-659)||(15294670-15294734)
chr8 (595-659)||(15475039-15475103)
chr8 (600-651)||(6292415-6292466)
chr8 (604-659)||(17647002-17647057)
chr8 (604-658)||(477113-477167)
chr8 (611-659)||(3094318-3094366)
chr8 (607-659)||(22910267-22910319)
[»] chr5 (8 HSPs)
chr5 (604-659)||(20923727-20923782)
chr5 (604-659)||(23172497-23172552)
chr5 (604-659)||(18051595-18051650)
chr5 (600-659)||(18843720-18843779)
chr5 (604-659)||(19042454-19042509)
chr5 (604-659)||(22645784-22645839)
chr5 (604-659)||(27340251-27340306)
chr5 (604-659)||(43234877-43234932)
[»] chr3 (7 HSPs)
chr3 (604-659)||(28745779-28745834)
chr3 (604-659)||(3449356-3449411)
chr3 (604-659)||(24649754-24649809)
chr3 (604-659)||(29067293-29067348)
chr3 (604-659)||(30727756-30727811)
chr3 (1-48)||(45568517-45568564)
chr3 (4-48)||(3606742-3606786)
[»] scaffold0445 (1 HSPs)
scaffold0445 (1-48)||(1314-1361)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-48)||(58164-58198)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-45)||(7689-7733)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 166 - 668
Target Start/End: Complemental strand, 34479344 - 34478826
Alignment:
Q  166 cgtccctcctcgatgaactggacatgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34479344 cgtccctcctcgatgaactggacatgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaactgaagtttaaattgcatgat 34479245  T
Q  266 aaatgagatggcnnnnnnnaa-cggatacctatattagtttatgtttgtaggcaagaaaaaattatttatatttttataaataaaaatatgaaggataaa 364  Q
    ||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34479244 aaatgagatggctttgtttaaacggatacctatattagtttatgtttgtaggcaagaaaaaattatttatatttttataaataaaaatatgaaggataaa 34479145  T
Q  365 tcaaatgcatgtaaggtgaaggcttgtggacttaagtgtataaataaagagtgacaagacatacataacaaacaacttgtcaacaacacagattctacaa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34479144 tcaaatgcatgtaaggtgaaggcttgtggacttaagtgtataaataaagagtaacaagacatacataacaaacaacttgtcaacaacacagattctacaa 34479045  T
Q  465 attcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgaggg------tcgaatga----agccaaacatgcatgtcagtgac 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      ||  | ||     |  |||||||||||||||||||    
T  34479044 attcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgagagttattatcctaagacacggggtaaacatgcatgtcagtgac 34478945  T
Q  555 aataatctaattgtgtttataaacaagggtaaggtattgtaa-------tggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttc 647  Q
    ||||||||||||||||||||||||||||||   | |||||||       || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34478944 aataatctaattgtgtttataaacaagggt--cgaattgtaataagcattgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttc 34478847  T
Q  648 ttcaccttcaaccattcatat 668  Q
    |||||||||||| ||||||||    
T  34478846 ttcaccttcaacgattcatat 34478826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34479511 - 34479462
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacgagg 50  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  34479511 tcaaacgccacataagacgacgaacaatacaacgccatactcagacgagg 34479462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 9955155 - 9955100
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  9955155 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 9955100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 25146888 - 25146833
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||| |||||||||| |||||||  |||||||| |||||||||||||||||||    
T  25146888 aaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaac 25146833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50377348 - 50377301
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  50377348 tcaaatgccacaaaaaacgacgaacaacacaacgccgtacttagacga 50377301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 659
Target Start/End: Complemental strand, 9327339 - 9327280
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||||||| |||||||||| |||||||| |  ||||| |||||||| ||||||||||    
T  9327339 tgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaac 9327280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10776533 - 10776580
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| ||||| ||||||||||||||||||||| ||| ||||||    
T  10776533 tcaaacgccgcataagacgacgaacaacacaacgccgcacttagacga 10776580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21686893 - 21686846
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || || ||||||||||||||||||||||||| ||||||    
T  21686893 tcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacga 21686846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 23528665 - 23528720
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||| |||||||||||||||||  | |||||| ||||||||||| |||||||    
T  23528665 aaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaac 23528720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 34483996 - 34483910
Alignment:
Q  188 catgtacaattctcactaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagat 274  Q
    |||||||||||  ||||||||| |||||||||| | ||| | ||||||||||   |||||||||  | |||| ||||||||||||||    
T  34483996 catgtacaatttacactaatttatagtttttcacctaaacgcggaactcatcttgaaatgaagtcgagattgaatgataaatgagat 34483910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 659
Target Start/End: Original strand, 12513281 - 12513345
Alignment:
Q  595 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||| ||| |||||||||||||||||| || ||| | | |||||| ||||||||||| |||||||    
T  12513281 aatgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaac 12513345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 613 - 665
Target Start/End: Complemental strand, 18891799 - 18891747
Alignment:
Q  613 acttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 665  Q
    |||||||||||||||||| || |||| ||||||| |||| ||||||| |||||    
T  18891799 acttaaatcttaaaatttagatttttttgactttattcatcttcaacgattca 18891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 34491968 - 34491896
Alignment:
Q  202 actaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagat 274  Q
    |||||||| || ||||||| | ||||| | ||||||||||||||| ||||| |||||  |||| |||||||||    
T  34491968 actaatttttaatttttcacctaaatgagaaactcatccaaaaataaagttgaaattatatgaaaaatgagat 34491896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 47132917 - 47132873
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||| || |||||||||||||||||||||||  ||||||||||    
T  47132917 aacgccgcacaaaacgacgaacaacacaacgccccactcagacga 47132873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 3333161 - 3333087
Alignment:
Q  202 actaatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgagatgg 276  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  3333161 actaatttttagtttttcactcaaatgaggaactcatccaaaaataaagttgaaattgcatgaaaaatgagatgg 3333087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 5058538 - 5058593
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||||  |||||||| || ||||||||||||||||    
T  5058538 aaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaac 5058593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 3314053 - 3313984
Alignment:
Q  204 taatttctagtttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgaga 273  Q
    |||||| |||||||||| |  |||| ||||||| ||||||||||||||| ||||||||| | ||||||||    
T  3314053 taatttttagtttttcacctgaatgaggaactcgtccaaaaatgaagttgaaattgcataaaaaatgaga 3313984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 657
Target Start/End: Original strand, 11326395 - 11326448
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttca 657  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||    
T  11326395 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttca 11326448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 8346653 - 8346598
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||| ||| ||||| ||||||||| | |||||| |||||||||||||||||||    
T  8346653 aaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaac 8346598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 26281429 - 26281374
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  26281429 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 26281374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39328862 - 39328909
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || || ||||||||||||||||||||||||| ||||||    
T  39328862 tcaaacgccgcacaagacgacgaacaacacaacgccgtacttagacga 39328909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45349871 - 45349906
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgcc 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  45349871 tcaaacgccacacaaaacgacgaacaacacaacgcc 45349906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 652
Target Start/End: Complemental strand, 44944969 - 44944921
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcac 652  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||||    
T  44944969 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcac 44944921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 9596238 - 9596180
Alignment:
Q  215 ttttcatccaaatggggaactcatccaaaaatgaagtttaaattgcatgataaatgaga 273  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||    
T  9596238 ttttcatccaaaagaggaactcatccaaaaatgaagttgaaattgcatgaaaaatgaga 9596180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 655
Target Start/End: Original strand, 4156772 - 4156823
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 655  Q
    ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||    
T  4156772 aaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctt 4156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37030298 - 37030254
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcaga 45  Q
    |||||||||| | || |||||||||||||||||||||||||||||    
T  37030298 tcaaacgccatacaagacgacgaacaacacaacgccgtactcaga 37030254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 5362083 - 5362028
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||| |||||||    
T  5362083 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaac 5362028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 9770117 - 9770176
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||| ||||||||||  |||||| | | ||||||||||||| ||||||||||||    
T  9770117 tgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaac 9770176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19853584 - 19853631
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||||||    
T  19853584 tcaaatgccacataagacgacgaacaacacaacgccgcacttagacga 19853631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 52944342 - 52944300
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagac 46  Q
    |||||| || |||||||||||||||||||||||| ||||||||    
T  52944342 aacgccgcacaaaacgacgaacaacacaacgccgcactcagac 52944300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 1404792 - 1404847
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  1404792 aaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaac 1404847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 656
Target Start/End: Complemental strand, 1690876 - 1690830
Alignment:
Q  610 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttc 656  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  1690876 ccgacttaaatcttaaaatttaggattttgtgactttcttcaccttc 1690830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 31238097 - 31238042
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||| | | ||||||  ||||||||||||||||||    
T  31238097 aaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaac 31238042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 31578014 - 31578069
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||||||||||||| |||||||||   |||||| || ||||||||||||||||    
T  31578014 aaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaac 31578069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 665
Target Start/End: Complemental strand, 15516683 - 15516618
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 665  Q
    |||||||||| | ||||||||||||| |||  | |||||| |||||| |||||||||||| |||||    
T  15516683 tgttaaaatcgcaacttaaatcttaatattcagcattttgcgactttattcaccttcaacaattca 15516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 26053416 - 26053362
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 658  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26053416 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26053362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 26073469 - 26073415
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 658  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26073469 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 6943580 - 6943525
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  6943580 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 6943525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 30912532 - 30912477
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  30912532 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 30912477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 654
Target Start/End: Original strand, 7223528 - 7223578
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacct 654  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  7223528 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct 7223578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 665
Target Start/End: Complemental strand, 2912367 - 2912306
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 665  Q
    ||||||||||||||||||||||||||| | ||||||  ||||||| || ||||||| |||||    
T  2912367 aaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattca 2912306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13546735 - 13546782
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
T  13546735 tcaaacgccgcataagacgacgaacaacacaacgccgcactcaaacga 13546782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 655
Target Start/End: Complemental strand, 15528230 - 15528179
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 655  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||    
T  15528230 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctt 15528179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 17250062 - 17250121
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||||||| ||||||   | ||||||  ||||||||||||||||||    
T  17250062 tgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaac 17250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23128636 - 23128589
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  23128636 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 23128589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 28981176 - 28981145
Alignment:
Q  17 acgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||||||||||||||||||||||||||    
T  28981176 acgacgaacaacacaacgccgtactcagacga 28981145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 10509143 - 10509089
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 658  Q
    ||||||| |||||||||| |||||||  ||| ||||||||||||||||| |||||    
T  10509143 aaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaa 10509089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 659
Target Start/End: Complemental strand, 27233391 - 27233342
Alignment:
Q  610 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  27233391 ccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 27233342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 5922058 - 5922113
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  5922058 aaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 5922113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 659
Target Start/End: Original strand, 15294670 - 15294734
Alignment:
Q  595 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15294670 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15294734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 659
Target Start/End: Original strand, 15475039 - 15475103
Alignment:
Q  595 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15475039 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 651
Target Start/End: Complemental strand, 6292466 - 6292415
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttca 651  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||| ||||    
T  6292466 tgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttca 6292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 17647002 - 17647057
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  17647002 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 17647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 477167 - 477113
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 658  Q
    ||||||| |||||||||| ||||||   | |||||||||||||||||||||||||    
T  477167 aaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaa 477113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 659
Target Start/End: Complemental strand, 3094366 - 3094318
Alignment:
Q  611 cgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||||  | ||||||  ||||||||||||||||||    
T  3094366 cgacttaaatcttaaaattcaggattttgctactttcttcaccttcaac 3094318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 22910319 - 22910267
Alignment:
Q  607 atcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||||||||||| |||||||| | |||||  |||||||||||| ||||||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaac 22910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 20923727 - 20923782
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| ||||||   |||||||| |||||||||||||||||||    
T  20923727 aaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaac 20923782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 23172552 - 23172497
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||| |||||||    
T  23172552 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaac 23172497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 18051650 - 18051595
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||| | | |||||| ||||||||||| |||||||    
T  18051650 aaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaac 18051595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 18843720 - 18843779
Alignment:
Q  600 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||||| |||||||||||| || ||||  | |||||| |||||||||||||||||||    
T  18843720 tgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaac 18843779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 19042509 - 19042454
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||| ||||||||  ||||||||   ||||||||||||||||||||||||||    
T  19042509 aaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaac 19042454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 22645839 - 22645784
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| ||||||   | |||||| |||||||||||||||||||    
T  22645839 aaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaac 22645784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 27340306 - 27340251
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| ||||||||   |||||| ||||||||||| |||||||    
T  27340306 aaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaac 27340251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 43234877 - 43234932
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  43234877 aaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 43234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 28745779 - 28745834
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||| ||||||| |||||||| | |||||| |||||||||||||||||||    
T  28745779 aaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 28745834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 3449411 - 3449356
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||| |||||||||    
T  3449411 aaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaac 3449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 24649809 - 24649754
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||| |||||| | | ||||| |||||| |||||||||||||    
T  24649809 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaac 24649754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Original strand, 29067293 - 29067348
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    |||||||||||||||||  |||||||  | |||||| |||||||||||||||||||    
T  29067293 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaac 29067348  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 659
Target Start/End: Complemental strand, 30727811 - 30727756
Alignment:
Q  604 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 659  Q
    ||||||| |||||||||||||||||   |||||||  |||||||||||||||||||    
T  30727811 aaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaac 30727756  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45568517 - 45568564
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  45568517 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 45568564  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3606786 - 3606742
Alignment:
Q  4 aacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    ||||||||| || |||||||||||||||| |||| ||||||||||    
T  3606786 aacgccacacaagacgacgaacaacacaatgccgcactcagacga 3606742  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1361 - 1314
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||| || ||||||||||||||||||||| ||| ||||||    
T  1361 tcaaacgccacacaagacgacgaacaacacaacgccgcacttagacga 1314  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 58164 - 58198
Alignment:
Q  14 aaaacgacgaacaacacaacgccgtactcagacga 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  58164 aaaacgacgaacaacacaacgccgcactcagacga 58198  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7733 - 7689
Alignment:
Q  1 tcaaacgccacataaaacgacgaacaacacaacgccgtactcaga 45  Q
    |||||||||||| || ||||| ||||||||||||||| |||||||    
T  7733 tcaaacgccacacaagacgacaaacaacacaacgccgcactcaga 7689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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