View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_44 (Length: 236)
Name: NF19198_low_44
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 24370039 - 24369920
Alignment:
| Q |
19 |
aaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
24370039 |
aaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaaccaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctag |
24369940 |
T |
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| Q |
118 |
ccttcttccgattaagccat |
137 |
Q |
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|||||||||||||||||||| |
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| T |
24369939 |
ccttcttccgattaagccat |
24369920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 24358664 - 24358564
Alignment:
| Q |
38 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
136 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
24358664 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca |
24358565 |
T |
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| Q |
137 |
t |
137 |
Q |
| |
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| |
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| T |
24358564 |
t |
24358564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 24364627 - 24364727
Alignment:
| Q |
38 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
136 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
24364627 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca |
24364726 |
T |
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| Q |
137 |
t |
137 |
Q |
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| |
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| T |
24364727 |
t |
24364727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 24354974 - 24354902
Alignment:
| Q |
65 |
acctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat |
137 |
Q |
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||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
24354974 |
acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccat |
24354902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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