View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_47 (Length: 232)
Name: NF19198_low_47
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 42662783 - 42663017
Alignment:
| Q |
9 |
gaagtgagaggcgcggcggctcgcaagttgcaaagttacaactattaaaaaggtaggtacaagtgagtgagtgattaaaaccaaacacactcagtaaccg |
108 |
Q |
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| T |
42662783 |
gaagtgagaggcgcggcggctcgcaagttgcaaagttacaactattaaaaaggttggagcaagtgagtgagtgattaaaaccaaacacactcagtaaccc |
42662882 |
T |
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| Q |
109 |
a-ctcattccattccattc----------catggcttcttcaacatctctgttccaatcttcacctttctctctcaacaccaaaaccaaaccctattctt |
197 |
Q |
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| T |
42662883 |
aactcattccattccattccattcaattccatggcttcttcaacatctctgttccaatcttcacctttctctctcaacaccaaaaccaaaccctattctt |
42662982 |
T |
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| Q |
198 |
ctcttcccaaatcaccaaaacccactcatttcatc |
232 |
Q |
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| T |
42662983 |
ctcttcccaaatcaccaaaacccactcatttcatc |
42663017 |
T |
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