View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19198_low_5 (Length: 601)
Name: NF19198_low_5
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_5 |
 | |
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| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 25 - 594
Target Start/End: Original strand, 12610576 - 12611145
Alignment:
| Q |
25 |
gttctaaagtattaaccattcaattcaatctaagctctgcaccaaggggtttattatccttaccaggattatagacttgatattgttatcagttaaacat |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12610576 |
gttctaaagtatcaaccattcaattcaatctaagctctacaccaaggggtttattatccttaccaggattatagacttgatattgttatcagttaaacat |
12610675 |
T |
|
| Q |
125 |
atatcttggttgctctcattaccaccttggaattttagaagaatgtctacgagatcttcttcttctccaccttgactttcatttgcttttgactttgctt |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12610676 |
atatcttggttgctgtcattaccaccttggaattttagaagaacgtctaccagatcttcttcttctccaccttgactttcatttgcttttgactttgctt |
12610775 |
T |
|
| Q |
225 |
ctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
12610776 |
ctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgc |
12610875 |
T |
|
| Q |
325 |
tgaaggaaataattcagctatgtcaaaacctcctgcaattgattctccatctctaatagacccaaactcttctctgcctttgcctttgctgccaaacgcg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
12610876 |
tgaaggaaataattcagctatgtcaaaacctcctgcaattgattctccatctccaatagatccaaactcttctctgcctttgcctttgctgccaaacgca |
12610975 |
T |
|
| Q |
425 |
gcctttgtaatgataccaaatgttgatgaaactacaaccttagtgatgttgacgggtgacccttgttgcaaatcaatcttttttacgagattgttaagct |
524 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12610976 |
gcctttgtaatgatagaaaatgttgatgaaactacaagctgagttatattgacgggcgacccttgttgcgaatcaatcttttttacgagattgttaagct |
12611075 |
T |
|
| Q |
525 |
cttcttctcttattggttgaaacgaactaacacgcttttgtgtgaaaagctccatcgtgcatattcttcg |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
12611076 |
cttcttctcttattggttgaaacgaactaacacgcttttgtgtgaaaagctccattgtgcatatttttcg |
12611145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 67 - 594
Target Start/End: Complemental strand, 15885430 - 15884903
Alignment:
| Q |
67 |
caaggggtttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctctcattaccaccttggaattttagaaga |
166 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||| ||||| |||||||| |||||||||| | | ||||| | || |||| ||||||||||| |
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|
| T |
15885430 |
caaggggtttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaaga |
15885331 |
T |
|
| Q |
167 |
atgtctacgagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttcagtgacaatgttttctagtatttgatcaattt |
266 |
Q |
| |
|
| ||| || | |||||||||| || | |||| | ||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
15885330 |
acgtcaaccaaatcttcttctgcttcttcttggcattcttttgcttttgaatttgcttctttatgttcaatgatgatgttttctagtattcgatcaatac |
15885231 |
T |
|
| Q |
267 |
gcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagctgaaggaaataattcagctatgtcaaaacctcctgcaattga |
366 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||| | |||| |||||||||||||||| |||||||| |
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|
| T |
15885230 |
gtctatgcaacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaaggaaacagttcacctatgtcaaaacctccagcaattga |
15885131 |
T |
|
| Q |
367 |
ttctccatctctaatagacccaaactcttctctgcctttgcctttgctgccaaacgcggcctttgtaatgataccaaatgttgatgaaactacaacctta |
466 |
Q |
| |
|
|||||| | | | |||| | ||||||||| | |||||| |||| | ||||| || ||| ||| || |||| ||||||| ||||||||||||| | | |
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|
| T |
15885130 |
ttctcccttccccaaagacgcgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaaggatagcaaatgtcgatgaaactacaagttca |
15885031 |
T |
|
| Q |
467 |
gtgatgttgacgggtgacccttgttgcaaatcaatcttttttacgagattgttaagctcttcttctcttattggttgaaacgaactaacacgcttttgtg |
566 |
Q |
| |
|
|||| ||||| || ||||||||| | | || ||||| |||| | ||||||| ||| | |||||||||||||||| || || ||||| ||| | ||||| | |
|
|
| T |
15885030 |
gtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctcttattggatggaatgaactcacatgtttttgcg |
15884931 |
T |
|
| Q |
567 |
tgaaaagctccatcgtgcatattcttcg |
594 |
Q |
| |
|
||||||||||| ||||||||| |||| |
|
|
| T |
15884930 |
ataaaagctccattgtgcatatttttcg |
15884903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 75 - 594
Target Start/End: Original strand, 12637632 - 12638145
Alignment:
| Q |
75 |
ttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctctcattaccaccttggaattttagaagaatgtctac |
174 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||| | |||||||||||||| |||||| |||||| ||||| |
|
|
| T |
12637632 |
ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac |
12637731 |
T |
|
| Q |
175 |
gagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgc |
274 |
Q |
| |
|
|||||||| ||| || | |||| | |||||||||||||| ||||||||||||||| ||| |||||| ||| ||| |||||||||| |||||| |
|
|
| T |
12637732 |
cagatcttcctctacttcgcctt------cttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc |
12637825 |
T |
|
| Q |
275 |
aacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagctgaaggaaataattcagctatgtcaaaacctcctgcaattgattctccat |
374 |
Q |
| |
|
|| ||| | ||||| ||| ||||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
12637826 |
aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaacctcctccaactgattctccat |
12637925 |
T |
|
| Q |
375 |
ctctaatagacccaaactcttctctgcctttgcctttgctgccaaacgcggcctttgtaatgataccaaatgttgatgaaactacaaccttagtgatgtt |
474 |
Q |
| |
|
| | || | | || |||| |||||||| |||| | |||||||| ||| ||||| | ||| | |||||| |||||| | | ||||||||| |
|
|
| T |
12637926 |
ttgccaacgatacgagctgttcttggcctttgcatttgtttccaaacgcagcccttgtagtaatagtcataattgatgtaactacggcttgagtgatgtt |
12638025 |
T |
|
| Q |
475 |
gacgggtgacccttgttgcaaatcaatcttttttacgagattgttaagctcttcttctcttattggttgaaacgaactaacacgcttttgtgtgaaaagc |
574 |
Q |
| |
|
|| |||||| |||||||| ||||||| |||| | ||||||| | | ||||||||||||||| || | || ||||||||||| ||||| || | ||| |
|
|
| T |
12638026 |
gatgggtgatccttgttgtgaatcaatacttttgatgagattggtgaactcttcttctcttataggccggaatgaactaacacgtttttgcgtaagaagt |
12638125 |
T |
|
| Q |
575 |
tccatcgtgcatattcttcg |
594 |
Q |
| |
|
|| || ||||||||| |||| |
|
|
| T |
12638126 |
tcaattgtgcatatttttcg |
12638145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 75 - 540
Target Start/End: Original strand, 62762 - 63224
Alignment:
| Q |
75 |
ttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctctcattaccaccttggaattttagaagaatgtctac |
174 |
Q |
| |
|
||||||| ||||||| || ||||| ||| |||||||| | || || |||||||||||| ||| |||| |||||| || || |||||||||| |||||| |
|
|
| T |
62762 |
ttattatacttaccaagagtatagccttaatattgttgttggtcaaggatatatcttggtcgctgtcatcaccaccctgaaactttagaagaacgtctac |
62861 |
T |
|
| Q |
175 |
gagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgc |
274 |
Q |
| |
|
||||||||| |||| | ||| | ||| ||| ||||| |||||||||||||||||| | |||| |||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
62862 |
cagatcttctgcttc---agtttgtccttctttttcttttaactttgcttctttatgttgaatgacgatgttttcaagtatctgatcaagttgtctatgc |
62958 |
T |
|
| Q |
275 |
aacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagctgaaggaaataattcagctatgtcaaaacctcctgcaattgattctccat |
374 |
Q |
| |
|
||||||| ||||||||||| | | | | ||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||| || || |
|
|
| T |
62959 |
aacctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaaggaaataattcaattatttcaaaacctcctccaattgatcctatat |
63058 |
T |
|
| Q |
375 |
ctctaatagacccaaactcttctctgcctttgcctttgctgccaaacgcggcctttgtaatgataccaaatgttgatgaaactacaaccttagtgatgtt |
474 |
Q |
| |
|
|| | ||| |||||| |||| | |||||| |||| ||||||||| ||| ||| ||||||| || ||| || || ||||| | ||||||||| |
|
|
| T |
63059 |
ttcccaatgacgcaaactgttcttgggctttgcatttgtcgccaaacgcagcccttgaaatgatagaaatcattgttgtaagtacaagttcagtgatgtt |
63158 |
T |
|
| Q |
475 |
gacgggtgacccttgttgcaaatcaatcttttttacgagattgttaagctcttcttctcttattgg |
540 |
Q |
| |
|
||| || | |||||||||||||||||| |||| | ||||||| |||||||||||||||||||| |
|
|
| T |
63159 |
gacaggcaatccttgttgcaaatcaatccttttgatgagattggagagctcttcttctcttattgg |
63224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 164 - 333
Target Start/End: Original strand, 23036858 - 23037030
Alignment:
| Q |
164 |
agaatgtctacgagatcttcttcttctccaccttgactttcatttgcttttg---actttgcttctttatgttcagtgacaatgttttctagtatttgat |
260 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| || || ||||||| ||||| | |||||||| ||| ||| |||||||||| ||| |||| |
|
|
| T |
23036858 |
agaacgtctacgagatcttcttctactctaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgat |
23036957 |
T |
|
| Q |
261 |
caatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagctgaaggaaa |
333 |
Q |
| |
|
|| |||| | ||| | ||||||||| |||||||||||||| | || ||| || |||||||||||||| ||||| |
|
|
| T |
23036958 |
cagtttgtcgatgaatcctctccagcttaggcctcaaaccagtaatacgctgtagccatttagctgagggaaa |
23037030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 333
Target Start/End: Original strand, 23039735 - 23039907
Alignment:
| Q |
164 |
agaatgtctacgagatcttcttcttctccaccttgactttcatttgcttttg---actttgcttctttatgttcagtgacaatgttttctagtatttgat |
260 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||| || || ||||||| ||||| | |||||||| ||| ||| |||||||||| ||| |||| |
|
|
| T |
23039735 |
agaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttctaatatctgat |
23039834 |
T |
|
| Q |
261 |
caatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttagctgaaggaaa |
333 |
Q |
| |
|
|| |||| | ||| |||||||| || |||||||||| ||| | |||| | || | |||||||||||| ||||| |
|
|
| T |
23039835 |
cagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgagggaaa |
23039907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 363
Target Start/End: Complemental strand, 5770 - 5626
Alignment:
| Q |
219 |
ttgcttctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagcca |
318 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| |||||||||||| |||| | ||| | | |||| || |||||||||||||| | ||| |||| ||||| |
|
|
| T |
5770 |
ttgcttctttatgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagcca |
5671 |
T |
|
| Q |
319 |
tttagctgaaggaaataattcagctatgtcaaaacctcctgcaat |
363 |
Q |
| |
|
|||||| || ||||| || || | | |||||||||||||||||| |
|
|
| T |
5670 |
tttagcagatggaaacaaatctcccaagtcaaaacctcctgcaat |
5626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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