View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_50 (Length: 226)
Name: NF19198_low_50
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 46428897 - 46429097
Alignment:
| Q |
12 |
gatatgaacatgctgaaagagnnnnnnnngttttagttaacttttagaagtcccacatt-tgtatttcatgaaagaaacaagtctttataagcttctgac |
110 |
Q |
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| T |
46428897 |
gatatgagcatgctgaaagagaaaaaaaagttttagttaacttttagaagtcccacatcgtgtatttcatgaaagaaataagtctttataaccttctgac |
46428996 |
T |
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| Q |
111 |
aaggctgtcaacttgctgagttgggtaaccccaacttgtaacccaagtgggggc----atcaaggtggaattgccaggttgggttggtggctgcaccatg |
206 |
Q |
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| T |
46428997 |
aaggctgtcaacttgctgagttgggtaaccccaacttgtaacccaactgggggcatcaatcaaggtggaattgtcaggttgggttggtggctgcaccatg |
46429096 |
T |
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| Q |
207 |
c |
207 |
Q |
| |
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| |
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| T |
46429097 |
c |
46429097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 46621754 - 46621621
Alignment:
| Q |
41 |
gttttagttaacttttagaagtcccacattt-gtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac |
139 |
Q |
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| T |
46621754 |
gttttagttaacatttagaagtcccacatcgagaatttcatgatagaaataagtctatataaacttctggcaaggctgccagcttgccgagttgggtaac |
46621655 |
T |
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| Q |
140 |
cccaacttgtaacccaagtgggggcatcaaggtg |
173 |
Q |
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| T |
46621654 |
ttcaacttgtaacccaagtgggggcatgaaggtg |
46621621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 46627487 - 46627354
Alignment:
| Q |
41 |
gttttagttaacttttagaagtcccacattt-gtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac |
139 |
Q |
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| T |
46627487 |
gttttagttaacatttagaagtcccacatcgagtatttcatgaaagaaataattctatataatcttctgacaaggctgccagcttgccgagctgggtaac |
46627388 |
T |
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| Q |
140 |
cccaacttgtaacccaagtgggggcatcaaggtg |
173 |
Q |
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| T |
46627387 |
ttcaacttgtaactcaagtgggggcatgaaggtg |
46627354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 46621601 - 46621571
Alignment:
| Q |
177 |
ttgccaggttgggttggtggctgcaccatgc |
207 |
Q |
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| T |
46621601 |
ttgccaggttgggttggtggctgcaccatgc |
46621571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 46627334 - 46627304
Alignment:
| Q |
177 |
ttgccaggttgggttggtggctgcaccatgc |
207 |
Q |
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|
| T |
46627334 |
ttgccaggttgggttggtggctgcaccatgc |
46627304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 46430346 - 46430387
Alignment:
| Q |
125 |
gctgagttgggtaaccccaacttgtaacccaagtgggggcat |
166 |
Q |
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| T |
46430346 |
gctgagttgggtaataccaacctgtaacccaagtgggggcat |
46430387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 37147384 - 37147518
Alignment:
| Q |
41 |
gttttagttaacttttagaagtcccacatt-tgtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac |
139 |
Q |
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| T |
37147384 |
gttttagtttacatttataagtcccacatcgtgtatttcataaaagaaactagtctttataatcttatgacaaggctatcagcttgccgagttggataac |
37147483 |
T |
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| Q |
140 |
cccaacttgtaacccaagtgggggcatcaaggtgg |
174 |
Q |
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| T |
37147484 |
atcaacttgtaacccaagtgggggcaacaatgtgg |
37147518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 38750028 - 38750078
Alignment:
| Q |
123 |
ttgctgagttgggtaaccccaacttgtaacccaagtgggggcatcaaggtg |
173 |
Q |
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| T |
38750028 |
ttgctgagttgaataacaccaacttgtaacccatgtgggagcatcaaggtg |
38750078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 38849074 - 38849024
Alignment:
| Q |
123 |
ttgctgagttgggtaaccccaacttgtaacccaagtgggggcatcaaggtg |
173 |
Q |
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||||||||||| |||| ||||||||||||||| ||||| ||||||||||| |
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| T |
38849074 |
ttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtg |
38849024 |
T |
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