View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_52 (Length: 221)
Name: NF19198_low_52
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 45362197 - 45362382
Alignment:
| Q |
19 |
ccagacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaacagaagctgtaatcaaag |
118 |
Q |
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| T |
45362197 |
ccagacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaacagaagctgtaatcaaag |
45362296 |
T |
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| Q |
119 |
aagatgggaagcttcatgttatagtgaggagatcaaatgcttcaagaaggtctcattctcagtctcatacaacacctcgagcttca |
204 |
Q |
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| T |
45362297 |
aagatgggaagcttcatgttatagtgaggagatcaaatgcttcaagaaggtctcattctcagtctcatacaacacctcgagcttca |
45362382 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 25039017 - 25039157
Alignment:
| Q |
22 |
gacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaacagaagctgtaatcaaagaag |
121 |
Q |
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|||||||||||| |||||||||| || |||||||| |||||||| ||||| ||||||| | ||| || |||||||| || |||| ||||||||||| |
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| T |
25039017 |
gacactgctggttccattgtttcaatccatgttgattctgatgtcatgtcattggatggtagaacac---cattggaaactgatgctgaaatcaaagaag |
25039113 |
T |
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| Q |
122 |
atgggaagcttcatgttatagtgaggagatcaaatgcttcaaga |
165 |
Q |
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|||| || |||||| | | || || | |||||||||||||||| |
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| T |
25039114 |
atggtaaacttcatatcactgttagaaaatcaaatgcttcaaga |
25039157 |
T |
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