View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_57 (Length: 203)
Name: NF19198_low_57
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 54679549 - 54679375
Alignment:
| Q |
13 |
catagggaaagagaaaagaggttagggtccaatgatatgtatcgaatattataaannnnnnnaggctaagctaacttataggattgaattcagaataata |
112 |
Q |
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| T |
54679549 |
catagagaaagagaaaaaaggttagggtccaatgatatgtatcgaatattataaatttttttaggctaagctaacttataggattgaattcagaataata |
54679450 |
T |
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| Q |
113 |
gtattactacaatgaagagggaagtaaaagaattgaatagtaatgcaaaagttataaagagtatgaatactaaat |
187 |
Q |
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| T |
54679449 |
gtattactacaatgaagagggaagtaaaagaattgaatagtaatgcaaaagttataaagagtatgaatactaaat |
54679375 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 54712238 - 54712194
Alignment:
| Q |
19 |
gaaagagaaaagaggttagggtccaatgatatgtatcgaatatta |
63 |
Q |
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| T |
54712238 |
gaaagaggaaagaggtcagggtccaatgatatgtatcgaatatta |
54712194 |
T |
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