View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19198_low_7 (Length: 498)
Name: NF19198_low_7
Description: NF19198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19198_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 25649351 - 25649447
Alignment:
| Q |
10 |
attattcttacttgttcatatgaatttcttcagctttacttgtctactcatgattttctagctta---tatagcttcatcaaacacacatcaatctct |
104 |
Q |
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| T |
25649351 |
attattcttacttgttcatatgaatttcttcagctttacttgtctactcat-attttctagcttattctatagcttcatcaaacacacatcaatctct |
25649447 |
T |
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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 350
Target Start/End: Complemental strand, 22843577 - 22843475
Alignment:
| Q |
248 |
taattaaccaatactaaaacatagcttc-cgaaattcatggaggttggttgaaaaaagatgacggtcaaaaataatatacacgtcgggatttattcatga |
346 |
Q |
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| T |
22843577 |
taattaaccaatagcaaaacatagatttgcggaattcatg-aggttggttgaaaaaagatggcggtgaacaataatatacacgtcgggatttattcgtga |
22843479 |
T |
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| Q |
347 |
gacc |
350 |
Q |
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|||| |
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| T |
22843478 |
gacc |
22843475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 4365981 - 4366084
Alignment:
| Q |
248 |
taattaaccaatactaaaacatagcttcc-gaaattcatggaggttggttgaaaaaagatgacggtcaaaaataa-tatacacgtcgggatttattcatg |
345 |
Q |
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| T |
4365981 |
taattaaccaataccaaaacatagttttgtggagttcatggaggttgatggaaaaaagatggcggttaacaataaatatatacatcgggatttattcatg |
4366080 |
T |
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| Q |
346 |
agac |
349 |
Q |
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|||| |
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| T |
4366081 |
agac |
4366084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 33690899 - 33690991
Alignment:
| Q |
248 |
taattaaccaatactaaaacatagc-ttccgaaattcatggaggttggttgaaaaaagatgacggtcaaaaat-aatatacacgtcgggattta |
339 |
Q |
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||||||||||||| ||| |||||| || || ||||||||||||||||| | ||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
33690899 |
taattaaccaatagcaaagcatagcattgcggaattcatggaggttggtgggaaaaa-atgacggtcaatgataaatatacacgtcggtattta |
33690991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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