View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19199_low_1 (Length: 508)

Name: NF19199_low_1
Description: NF19199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19199_low_1
NF19199_low_1
[»] chr1 (8 HSPs)
chr1 (279-493)||(51385442-51385657)
chr1 (353-493)||(14185525-14185665)
chr1 (421-493)||(7607248-7607320)
chr1 (421-493)||(31769808-31769880)
chr1 (97-180)||(4327307-4327390)
chr1 (279-343)||(27841257-27841322)
chr1 (11-56)||(4012564-4012611)
chr1 (11-56)||(25879434-25879481)
[»] chr4 (1 HSPs)
chr4 (421-493)||(41811133-41811205)
[»] chr7 (2 HSPs)
chr7 (98-183)||(13762617-13762702)
chr7 (11-56)||(35348172-35348219)
[»] chr8 (1 HSPs)
chr8 (279-343)||(16360456-16360521)
[»] chr6 (1 HSPs)
chr6 (11-56)||(2275230-2275277)
[»] chr5 (1 HSPs)
chr5 (11-56)||(39346720-39346767)
[»] chr2 (1 HSPs)
chr2 (11-56)||(10789920-10789967)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 279 - 493
Target Start/End: Complemental strand, 51385657 - 51385442
Alignment:
Q  279 aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatccttaannnnnnnattaaactactcatacatgtggtgat 377  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||       ||| || |||  |||||||| |||||    
T  51385657 aattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatccttaatttttttattgaagtacctatacatgttgtgat 51385558  T
Q  378 tatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagt 477  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || ||| |||||    
T  51385557 tatttttaaagaatgctattgtaaacattaatttgcattagtttattgtttgtctgtttatcatcttcaacaggtttcaaatatggagccaataaaaagt 51385458  T
Q  478 gataagggtagaacct 493  Q
    || |||||||||||||    
T  51385457 gacaagggtagaacct 51385442  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 493
Target Start/End: Original strand, 14185525 - 14185665
Alignment:
Q  353 ttaaactactcatacatgtggtgattatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggt 452  Q
    |||||||||  |||||||| ||||||| |||||||||||| |   ||| ||||||| ||  | |||||||||||||||||||||||||||||| | | ||    
T  14185525 ttaaactacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgtttgtttatcatcttctaaaagt 14185624  T
Q  453 ttcaaatatggaacctatacaaagtgataagggtagaacct 493  Q
    |||| |||||||||  |||||||||||  ||||||||||||    
T  14185625 ttcatatatggaactaatacaaagtgacgagggtagaacct 14185665  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 7607320 - 7607248
Alignment:
Q  421 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaacct 493  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| |||||||||||||    
T  7607320 taatctttgtttgtttatcatcttctatatgtttcatatatggaactaatacaaagtgacaagggtagaacct 7607248  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 31769880 - 31769808
Alignment:
Q  421 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaacct 493  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| |||||||||||||    
T  31769880 taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaacct 31769808  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 4327390 - 4327307
Alignment:
Q  97 tcatgatttaattcaaattttcaatccacaactcaacttatggttgatttcttttgatttttgtttgattcttataaataccta 180  Q
    |||||| | |||| || |||||||||||||||||| |||||  |  ||| | |||||||||||||||||||||||| |||||||    
T  4327390 tcatgaataaatttaacttttcaatccacaactcagcttatcatgaattacatttgatttttgtttgattcttatacataccta 4327307  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 27841322 - 27841257
Alignment:
Q  279 aattcatctggccaaattggattgggat-atgtcacagctcatagtaatgtgttctttgatcctta 343  Q
    |||||||||| ||||||||||||    | |||||||||||||||||| ||||||||||||||||||    
T  27841322 aattcatctgaccaaattggatttatgtcatgtcacagctcatagtagtgtgttctttgatcctta 27841257  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 4012564 - 4012611
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  4012564 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaa 4012611  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 25879434 - 25879481
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  25879434 cagagagtgaagtagtatacagtagtgattttaaaattagtattgaaa 25879481  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 41811133 - 41811205
Alignment:
Q  421 taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaacct 493  Q
    ||||||||||||||||||||||||| | | |||||| |||||||||  ||||||||||| |||||||||||||    
T  41811133 taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaacct 41811205  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 13762617 - 13762702
Alignment:
Q  98 catgatttaattcaaattttcaatccacaactcaacttatggttgatttcttttgatttttgtttgattcttataaatacctatat 183  Q
    ||||| |||||| || |||||||| |||||||||| ||||    ||| ||||||||||||||||||||||||||| ||||||||||    
T  13762617 catgaattaatttaacttttcaatacacaactcaaattatcacggatgtcttttgatttttgtttgattcttatacatacctatat 13762702  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 35348172 - 35348219
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  35348172 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaa 35348219  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 16360456 - 16360521
Alignment:
Q  279 aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatcctta 343  Q
    |||||||||| ||||||||||||   || |||||||| ||||||||| ||||||||||||||||||    
T  16360456 aattcatctgaccaaattggatttatgacatgtcacaactcatagtagtgtgttctttgatcctta 16360521  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2275230 - 2275277
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  2275230 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaa 2275277  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 39346720 - 39346767
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  39346720 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaa 39346767  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 10789967 - 10789920
Alignment:
Q  11 cagagagtgaagtagtata--gtagtaattttaaaattagtgttgaaa 56  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  10789967 cagagagtgaagtagtatatagtagtgattttaaaattagtattgaaa 10789920  T

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