View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19199_low_2 (Length: 371)
Name: NF19199_low_2
Description: NF19199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19199_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 214 - 337
Target Start/End: Complemental strand, 6752504 - 6752381
Alignment:
| Q |
214 |
attatgccggtagtagcaataaacctttgacctcgtcctgatcacactactccttaacaccttcacctagccaccaaaccaaccttatatctcacaaatg |
313 |
Q |
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| T |
6752504 |
attatgccggtagtagcgataaacctttgacctcgtcctgatcacactactccttaacaccttaacctagccaccaaaccaaccttatatctcacaaatg |
6752405 |
T |
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| Q |
314 |
gctacgatgttgatactcattcat |
337 |
Q |
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| T |
6752404 |
gctacgatgttgatactcattcat |
6752381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 6760728 - 6760620
Alignment:
| Q |
190 |
tattgttaattaataactgttagcattatgccggtagtagcaataaacctttgacctcgtcctgatcacactactccttaacaccttcacctagccacca |
289 |
Q |
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| T |
6760728 |
tattgttaattaataactgttagctttatgccgatagtggtgatgaacctttgatctc---ctaatcactatactccttaacgcctccacctagccacca |
6760632 |
T |
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| Q |
290 |
aaccaaccttat |
301 |
Q |
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|||||||||||| |
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| T |
6760631 |
aaccaaccttat |
6760620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 6760871 - 6760824
Alignment:
| Q |
28 |
tgtgatctggatcatgcatgagatcgctttctgagcaaaatcggagtga |
76 |
Q |
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| T |
6760871 |
tgtgatctggatcctgcatgagatcgcattctgagcaaaa-cggagtga |
6760824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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