View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1919_low_1 (Length: 485)
Name: NF1919_low_1
Description: NF1919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1919_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 29400526 - 29400980
Alignment:
| Q |
16 |
cctgtggcatctgatgaaggaacaggcgaagcaattccattggaagggaatggttcaccggtatctccttggtggcagcagcttcctaagcgctggctta |
115 |
Q |
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| T |
29400526 |
cctgtggcatctgatgaaggaacaggcgaagcaattccattggaagggaatggttcaccggtatctccttggtggcagcagcttcctaagcgctggctta |
29400625 |
T |
|
| Q |
116 |
tcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagtatcttatattggtattcacaatctaaattaccatgtgtttgtttgga |
215 |
Q |
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| T |
29400626 |
tcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagtatcttatattggtattcacaatctaaattaccatgtgtttgtttgga |
29400725 |
T |
|
| Q |
216 |
ttggtggcggatcgtttattatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgcagcttttgcactaccgtgattttacactgc |
315 |
Q |
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| T |
29400726 |
ttggtggcggatcgtttattatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgtagcttttgcactaccgtgattttacactgc |
29400825 |
T |
|
| Q |
316 |
gattctgtcaaacttaccgctaaaccaaacacagtcatatgtcttaatgtttgccatgtatcaaacttccaatatgtacactactttatatgtccactta |
415 |
Q |
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| T |
29400826 |
gattctgtcaaacttaccgctaaaccaaacacagtcatatgtcttaatgtttgccatgtatcaaacttccaatatgtacactactttatatgtccactta |
29400925 |
T |
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| Q |
416 |
ttatgctttctccttgaattatgtgaagcatgtaaaaatgtagttgagtgttttt |
470 |
Q |
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| T |
29400926 |
ttatgctttctccttgaattatgtgaagcatgcaaaaatgtagttgagtgttttt |
29400980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 11320981 - 11320890
Alignment:
| Q |
78 |
atctccttggtggcagcagcttcctaagcgctggcttatcgtattgctgtgttttacagcatttcttttatgcaacatggaccgtgtgagta |
169 |
Q |
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||||||||||||||||||| |||||||||| ||| |||| ||| |||| |||||||||||||| || | || || ||||| |||||||||| |
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| T |
11320981 |
atctccttggtggcagcagtttcctaagcgatgggttattgtactgctatgttttacagcattcctgctttgtaatatggatcgtgtgagta |
11320890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 31633761 - 31633834
Alignment:
| Q |
233 |
attatcgcttcctgatgcatgtgcgccatgattttgttaaagcttcaaagtgcagcttttgcactaccgtgatt |
306 |
Q |
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| T |
31633761 |
attatcgctttgtgatgcatgtgtgccatgattttgttggaatttcaaagtgtagcttttgccctactgtgatt |
31633834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 16852957 - 16852995
Alignment:
| Q |
254 |
tgcgccatgattttgttaaagcttcaaagtgcagctttt |
292 |
Q |
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| T |
16852957 |
tgcgccatgattttgttaaaacttcaaagtgtagctttt |
16852995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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