View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1919_low_13 (Length: 223)
Name: NF1919_low_13
Description: NF1919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1919_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 40455139 - 40455317
Alignment:
| Q |
29 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
128 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40455139 |
tgtcatctcctcaaccattgcagcagtccagttaggatctgctaaagcttcatgtacattactaggaatagaaatcgaggataattgagatacaaaagat |
40455238 |
T |
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| Q |
129 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40455239 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcat |
40455317 |
T |
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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 32202513 - 32202331
Alignment:
| Q |
25 |
aagttgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaa |
124 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32202513 |
aagttgtcatctcctcaaccattgcagcagttcagttaggatctgctaaagcttcatatacattactaggaatagaaatcgaggataattgagatacaaa |
32202414 |
T |
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| Q |
125 |
agatgcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32202413 |
agatgcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcat |
32202331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 56391185 - 56391363
Alignment:
| Q |
29 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
128 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |
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| T |
56391185 |
tgtcatctcctcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgat |
56391284 |
T |
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| Q |
129 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
56391285 |
gcatatgaccgagataacttgtgagttgacacataattactaatgggatatttagctttggattgagggtctggttcat |
56391363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 27515458 - 27515604
Alignment:
| Q |
61 |
taggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatatgaccgagataacttgtgagatgacac |
160 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
27515458 |
taggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgatgcatatgaccgagataacttgtgagttgacac |
27515557 |
T |
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| Q |
161 |
ataattactaatgggatattttactttggattggaggtatggttcat |
207 |
Q |
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||||||||||||||||||||| |||| ||||| ||| |||||||| |
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| T |
27515558 |
ataattactaatgggatatttagcttttgattgagggtctggttcat |
27515604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 39744274 - 39744096
Alignment:
| Q |
29 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
128 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |
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| T |
39744274 |
tgtcatctcctcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgat |
39744175 |
T |
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| Q |
129 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
207 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||||||| ||| |||||||| |
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| T |
39744174 |
gcatatgactgagataacttgtgagttgacacataattactaatgaggtatttagctttggattgagggtctggttcat |
39744096 |
T |
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