View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1919_low_6 (Length: 304)
Name: NF1919_low_6
Description: NF1919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1919_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 44975475 - 44975202
Alignment:
| Q |
16 |
caccttgtagctaagcaagaatactcattgataagaagtgcatcaagagcatatttgtacatagaaaagaagtgcatgaagagccaatacttaggtaaac |
115 |
Q |
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| T |
44975475 |
caccttgtagctaagcaagaatactcattgataagaagtgcatcaagagcatatttgtacatagaaaagaagtgcatgaagagccaatacttaggtaaac |
44975376 |
T |
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| Q |
116 |
aatccttagatataaagtatccagagaacagaaaaaatgctgcaagtagcactgtcatgagtgaagttccggcaatgtagtttggtgctaaagaactcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44975375 |
aatccttagatataaagtatccagagaacagaaaaaatgctgcaagtagcactgtcatgagtgaagttccagcaatgtagtttggtgctaaagaactcaa |
44975276 |
T |
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| Q |
216 |
gaacagaacaaatgagtttgccataagaactatgacccaaataaccaaaacaaagtaagcaaaagatagccaag |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975275 |
gaacagaacaaatgagtttgccataagaactatgacccaaataaccaaaacaaagtaagcaaaagatagccaag |
44975202 |
T |
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