View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1919_low_7 (Length: 292)
Name: NF1919_low_7
Description: NF1919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1919_low_7 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0173 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0036 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 95485 - 95654
Alignment:
| Q |
17 |
aactttttgttcggttttgattccgattcttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaaga |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95485 |
aactttttcttcggttttgattccgattcttgtttttgatgaaaacgaattaaagttttgcgtcacgacgtcgtttccggaaggttgaagtcggagaaga |
95584 |
T |
|
| Q |
117 |
acgaagcgacgccgtcacgagcacgtgtaatcggtggcggtggagaaggagtatgcgctgtcacggacga |
186 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95585 |
acgaagtgacgccgtcatgagcacgtgtaatcggtggcggtggagaaggagtatgcgctgtcacggacga |
95654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 19781 - 19974
Alignment:
| Q |
28 |
cggttttgattccgattcttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaag----- |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19781 |
cggttttgattccgattcttgtttttgatgaaaa-gaattacggttttgtgttacgacgtcgttttcggaaggtcgaagtcggagaagaacgaagcgaca |
19879 |
T |
|
| Q |
123 |
-cgacgccgtcacgagcacgtgtaatcggtggcggtggagaaggagtatgcgctgtcacggacgaggttttgtgcccaggagaacacgacggtgc |
216 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||| |||| |
|
|
| T |
19880 |
ccgacgccgtcactagcacatgtaattggtggcggtggagaaggagtatgcgctgtcacaggcgaggttttgtgtccaggagaagacgacagtgc |
19974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 13010069 - 13010257
Alignment:
| Q |
32 |
tttgattccgattcttgtttttgatgaaaacgaattaaagttttgtgtcacgacgtcgtttccggaaggttgaagtcggagaagaacgaagcgacg---- |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
13010069 |
tttgattccgattcttgtttttgatgaaaa-gaattacagtattgtgttacgacgtcgttttcggaaggtcgaagtcggagaagaacgaagcgacgccga |
13010167 |
T |
|
| Q |
128 |
--ccgtcacgagcacgtgtaatcggtggcggtggagaaggagtatgcgctgtcacggacgaggttttgtgcccaggagaacacgacggtgc |
216 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| |
|
|
| T |
13010168 |
caccgtcactagcacatgtaatcggtggcggtgg-gaaggagtatgcgctgtcacgggcgaggttttgtggccaggagaagacgatggtgc |
13010257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 22083803 - 22083757
Alignment:
| Q |
197 |
ccaggagaacacgacggtgccgctgatggagacgtcgaaggaaggag |
243 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22083803 |
ccaggagaagacgacggtgccgctgacggagacgtcgaaggaaggag |
22083757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University