View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1919_low_8 (Length: 286)
Name: NF1919_low_8
Description: NF1919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1919_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 28798945 - 28799203
Alignment:
| Q |
14 |
actgatatgaaggtcaggattatgggaccaaattatatccctgtggagaagaaagatttgtatgtgaaaagtgttcagagaacagttatttggatgggaa |
113 |
Q |
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| T |
28798945 |
actggtatgaaggtcagaattatgggaccaaattatatccctggggagaagaaagatttgtatgtgaaaagtgttcagagaacagttatttggatgggaa |
28799044 |
T |
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| Q |
114 |
agaagcaagaaaccgtggaggatgtcccttgtggaaatacagttgccatggtgggtttggatcaattcattaccaagaatgctaccttgacaaatgagaa |
213 |
Q |
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| T |
28799045 |
agaagcaagaaaccgtggaggatgtcccttgtggaaatacagttgccatggtgggtttggatcaattcattaccaagaatgctactttaacaaatgagaa |
28799144 |
T |
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| Q |
214 |
agaagtcgacgcacaccctattcgagttatgaagttttcagtgtcacctgtggtaagtg |
272 |
Q |
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| T |
28799145 |
agaagtcgacgcacaccctattcgagctatgaagttttcagtgtcacctgtggtaagtg |
28799203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 28687573 - 28687816
Alignment:
| Q |
21 |
tgaaggtcaggattatgggaccaaattatatccctgtggagaagaaagatttgtatgtgaaaagtgttcagagaacagttatttggatgggaaagaagca |
120 |
Q |
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| T |
28687573 |
tgaaggtcagaattatgggaccaaattttgtccctggggagaagaaagatttgtatgtgaaaagtgttcagagaactgttatttggatgggaaagagaca |
28687672 |
T |
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| Q |
121 |
agaaaccgtggaggatgtcccttgtggaaatacagttgccatggtgggtttggatcaattcattaccaagaatgctaccttgacaaatgagaaagaagtc |
220 |
Q |
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| T |
28687673 |
agaaactgttgaggacgtgccttgtggtaacacagtcgctatggttggtttggatcaatttatcaccaagaatgctacattgacgaatgagaaggaagtt |
28687772 |
T |
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| Q |
221 |
gacgcacaccctattcgagttatgaagttttcagtgtcacctgt |
264 |
Q |
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| T |
28687773 |
gatgcacaccctattcgtgctatgaagttttccgtctcacctgt |
28687816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 28793850 - 28794093
Alignment:
| Q |
21 |
tgaaggtcaggattatgggaccaaattatatccctgtggagaagaaagatttgtatgtgaaaagtgttcagagaacagttatttggatgggaaagaagca |
120 |
Q |
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| T |
28793850 |
tgaaggtcagaattatgggaccaaattttgtccctggggagaagaaagatttgtatgtgaaaagtgttcagcgaactgttatttggatgggaaagagaca |
28793949 |
T |
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| Q |
121 |
agaaaccgtggaggatgtcccttgtggaaatacagttgccatggtgggtttggatcaattcattaccaagaatgctaccttgacaaatgagaaagaagtc |
220 |
Q |
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| T |
28793950 |
agaaactgttgaggacgtgccttgtggtaacacagtcgctatggttggtttggatcaatttatcaccaagaatgctacattgacgaatgagaaggaagtt |
28794049 |
T |
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| Q |
221 |
gacgcacaccctattcgagttatgaagttttcagtgtcacctgt |
264 |
Q |
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| T |
28794050 |
gatgcacaccctattcgtgcgatgaagttttccgtctcacctgt |
28794093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 18160563 - 18160332
Alignment:
| Q |
21 |
tgaaggtcaggattatgggaccaaattatatccctgtggagaagaaagatttgtatgtgaaaagtgttcagagaacagttatttggatgggaaagaagca |
120 |
Q |
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||||||| |||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| || |
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| T |
18160563 |
tgaaggtgaggattatgggaccaaattacatccctggagagaagaaagatctgtacacgaaaagtgtccagagaactgttatttggatgggaaagagaca |
18160464 |
T |
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| Q |
121 |
agaaaccgtggaggatgtcccttgtggaaatacagttgccatggtgggtttggatcaattcattaccaagaatgctaccttgacaaatgagaaagaagtc |
220 |
Q |
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| T |
18160463 |
ggagactgttgaggatgtgccttgtggtaacactgttgctttggttggtttggatcaatttattacaaagaatgctacattgacaaatgagaaggaagtt |
18160364 |
T |
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| Q |
221 |
gacgcacaccctattcgagttatgaagttttc |
252 |
Q |
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| T |
18160363 |
gatgcccaccctatccgagctatgaagttttc |
18160332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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