View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19200_high_2 (Length: 532)
Name: NF19200_high_2
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 1868738 - 1868221
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868738 |
agtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactcttgacatctctatggatgatgggta |
1868639 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868638 |
ttgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
1868539 |
T |
|
| Q |
201 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868538 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
1868439 |
T |
|
| Q |
301 |
tgatttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcat |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1868438 |
tgatttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcat |
1868339 |
T |
|
| Q |
401 |
ctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatat |
500 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868338 |
ctagaagtcctttgaaaacggtaccaaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatat |
1868239 |
T |
|
| Q |
501 |
tttagcactttgagttga |
518 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1868238 |
tttagcactttgagttga |
1868221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 3 - 518
Target Start/End: Complemental strand, 1843127 - 1842612
Alignment:
| Q |
3 |
tggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1843127 |
tggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactcttgacatctctatggattattggtatt |
1843028 |
T |
|
| Q |
103 |
gaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgt |
202 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843027 |
gaggcatatgaatgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgt |
1842928 |
T |
|
| Q |
203 |
gtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842927 |
gtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatg |
1842828 |
T |
|
| Q |
303 |
atttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatct |
402 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1842827 |
atttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatct |
1842728 |
T |
|
| Q |
403 |
agaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattt |
502 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1842727 |
agaaatcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatattt |
1842628 |
T |
|
| Q |
503 |
tagcactttgagttga |
518 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
1842627 |
tagtgctttcagttga |
1842612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 1857140 - 1856781
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857140 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtg |
1857041 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| || ||| | | |||| || ||| |
|
|
| T |
1857040 |
ttgaggcatatgaatgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcatt---cgtcttaccttttgt |
1856944 |
T |
|
| Q |
201 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
300 |
Q |
| |
|
||| ||||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| || |
|
|
| T |
1856943 |
gtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctg |
1856844 |
T |
|
| Q |
301 |
tgatttatttgagagagaacaactacctcattaatgaattgattgatttggcttctatctatt |
363 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||||| | ||||||||| | |||||| |
|
|
| T |
1856843 |
tgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctatt |
1856781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 1815904 - 1816254
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1815904 |
agtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatggataatgggta |
1816003 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
|||||||| |||||| | |||||| |||||| |||||||||| | |||||| |||||||||||||||| || || || | | |||| |||||| |
|
|
| T |
1816004 |
ttgaggcagctgaatgcagatatgacagagctccagctacctcaacagctatcctaagacgagttttccaagtaagatcgtt---cgtcttaccttgtgt |
1816100 |
T |
|
| Q |
201 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
300 |
Q |
| |
|
| | | ||| ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1816101 |
gcgaagaaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctg |
1816200 |
T |
|
| Q |
301 |
tgatttatttgagagagaacaactacctcattaatgaattgattgatttggctt |
354 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||||||||| | ||||||||| |
|
|
| T |
1816201 |
tgatttatttgagagacaacatccacctcgttaatgaattgttcaatttggctt |
1816254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 9161726 - 9162063
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
||||||||||| || |||||||||||||| || ||||| || ||| | |||||||||||||||| |||||| |||||||||||||| || |||| |
|
|
| T |
9161726 |
agtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatggataataggta |
9161825 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattacttt-gtg |
199 |
Q |
| |
|
|||| ||| ||||||||||||| |||| |||| | ||| |||||| |||||||| | ||| |||||||||||| ||| || | |||| |||| || |
|
|
| T |
9161826 |
ttgatgcagatgaatgtaaatacgataaagctccggctgtctctgctgctatctttaaacgtgttttccatgttggattgtttgctttat--ctttagta |
9161923 |
T |
|
| Q |
200 |
tg-tgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcc |
298 |
Q |
| |
|
| ||||| ||| | |||| || |||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
9161924 |
ttatgtatgaaatcgaaaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttc |
9162023 |
T |
|
| Q |
299 |
tatgatttatttgagagagaacaactacctcattaatgaa |
338 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
9162024 |
tatgatttatttgggacagaacaactacctcgttaatgaa |
9162063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9229520 - 9229860
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| || |||| | |||| ||||||||||| |||| ||||||||||||||||| || |||| |
|
|
| T |
9229520 |
agtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataattggta |
9229619 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
|| ||| ||||||||| |||||||| |||| | |||| || || |||||| | | ||| ||||||||| || ||||||| |||| | | | || |
|
|
| T |
9229620 |
aggatgcagatgaatgtagatatgataaagctcctgctatttccgctgctatccttaaacgcgttttccatattgcattattttccttttcaatactagt |
9229719 |
T |
|
| Q |
201 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
300 |
Q |
| |
|
||| || ||| | ||||||| |||||| ||| |||||||||||| | |||||||||| |||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
9229720 |
gtgcatcaaatcgaaaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttcta |
9229819 |
T |
|
| Q |
301 |
tgatttatttgagagagaacaactacctcattaatgaattg |
341 |
Q |
| |
|
||||||||||| || | |||||| |||||||| |||||||| |
|
|
| T |
9229820 |
tgatttatttgggacaaaacaaccacctcatttatgaattg |
9229860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9170552 - 9170892
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
||||||||||||||||||||||| || || || |||||||| |||| | |||| ||||||||||| |||||| |||||||||||||| || || | |
|
|
| T |
9170552 |
agtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaa |
9170651 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatc-ttaagacgagttttccatgtttcattattcaccttattacttt-gt |
198 |
Q |
| |
|
|||| ||| ||||||||| ||| |||| |||| ||||| |||||| |||||| ||||| || |||||||||||| |||||| |||| |||| || |
|
|
| T |
9170652 |
ttgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttaag-cgggttttccatgttggattatttgttttat--ctttagt |
9170748 |
T |
|
| Q |
199 |
g-tgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattc |
297 |
Q |
| |
|
| | ||||| ||| | |||| || || ||| |||||||||| || ||||| |||||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
9170749 |
gctttgtatgaaatcgaaaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattc |
9170848 |
T |
|
| Q |
298 |
ctatgatttatttgagagagaacaactacctcattaatgaattg |
341 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
9170849 |
ctatgatttatttgggtcagaacaactacctcattaatgaattg |
9170892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 9155814 - 9156148
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
|||||||| || || |||||||||||||| || ||||| || |||| | |||| ||||||||||| ||| ||||||||||||||||| || |||| |
|
|
| T |
9155814 |
agtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtacttttgacatctctatggataatcggta |
9155913 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattacttt-gtg |
199 |
Q |
| |
|
|||| ||| ||||||||| ||| |||| |||| | ||| |||||| |||||||| | ||| |||||||||||| ||| || |||| |||| || |
|
|
| T |
9155914 |
ttgatgcagatgaatgtagatacgataaagctccggctgtctctgctgctatctttaaacgggttttccatgttggattgtttgttttat--ctttagta |
9156011 |
T |
|
| Q |
200 |
-tgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcc |
298 |
Q |
| |
|
| ||||| ||| || |||| || |||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
9156012 |
ctatgtatgaaatcaaaaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttc |
9156111 |
T |
|
| Q |
299 |
tatgatttatttgagagagaacaactacctcattaat |
335 |
Q |
| |
|
| ||||||||||| || || ||||||||||||||||| |
|
|
| T |
9156112 |
tgtgatttatttgggataggacaactacctcattaat |
9156148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9218635 - 9218975
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
||||||||||||||||||||||| || || || ||||| || |||| | |||| ||||||||||| |||||| |||||||||||||| || || | |
|
|
| T |
9218635 |
agtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaa |
9218734 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||| ||||| |||||| |||||| | | ||| |||||||||| | ||| || | |||| | | |
|
|
| T |
9218735 |
ttgatgcagctgaatgtagatatgataaagcaccagctgtctctgctgctatccttaaacgtgttttccatgctggattgtttgctttatctttacaatt |
9218834 |
T |
|
| Q |
201 |
gtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattccta |
300 |
Q |
| |
|
||||| ||| || |||| || || ||| ||||||||||||| |||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||| |
|
|
| T |
9218835 |
ttgtatgaaatcaaaaagtgttccgttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttccta |
9218934 |
T |
|
| Q |
301 |
tgatttatttgagagagaacaactacctcattaatgaattg |
341 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
9218935 |
tgatttatttgggacagaacaactacctcattaatgaattg |
9218975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 9118726 - 9118377
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
|||||||||||| | |||||||| ||||| || ||||| || |||| | |||| ||||||||||| |||||| |||||||||||||| || || | |
|
|
| T |
9118726 |
agtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaa |
9118627 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgt |
200 |
Q |
| |
|
||| ||| ||||||||| ||| |||| |||| ||||| |||||| |||||| | ||||| |||| |||| || |||||| | ||||| ||| || | |
|
|
| T |
9118626 |
atgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgtttcccatcttggattatttattttatt-cttagtat |
9118528 |
T |
|
| Q |
201 |
gt-gtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcct |
299 |
Q |
| |
|
| |||| ||| | |||| || || | | |||| |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
9118527 |
tttgtatgaaatcgaaaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcct |
9118428 |
T |
|
| Q |
300 |
atgatttatttgagagagaacaactacctcattaatgaattgattgatttg |
350 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||| | |||||| |
|
|
| T |
9118427 |
atgatttatttgggacagaataactacctcattaatgaattgctcgatttg |
9118377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9200119 - 9200459
Alignment:
| Q |
1 |
agtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggta |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||| ||||||| | |||| ||||||||||| |||||| |||||||| ||||| || || | |
|
|
| T |
9200119 |
agtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctctgtggataattggaa |
9200218 |
T |
|
| Q |
101 |
ttgaggcatatgaatgtaaatatgatagagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattacttt-gtg |
199 |
Q |
| |
|
|||| ||| |||||||| |||||||| |||| ||||| ||| || |||||| | | ||| |||||||||||| |||||| |||| |||| ||| |
|
|
| T |
9200219 |
ttgatgcagctgaatgtagatatgataaagctccagctgtctccgctgctatccttaaacgtgttttccatgttggattatttgttttat--ctttagtg |
9200316 |
T |
|
| Q |
200 |
-tgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcc |
298 |
Q |
| |
|
| ||||| ||| | |||| || || ||| |||||||||| || || || |||||||||||||||||| |||||| || | ||||||||||||||||| |
|
|
| T |
9200317 |
ctttgtatgaaatcgaaaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcc |
9200416 |
T |
|
| Q |
299 |
tatgatttatttgagagagaacaactacctcattaatgaattg |
341 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
9200417 |
tatgatttatttgggtcagaacaactacctcattaatgaattg |
9200459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 502
Target Start/End: Original strand, 9162133 - 9162227
Alignment:
| Q |
408 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattt |
502 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||| |||||||| || || ||| |||||||||| || || ||||| | |||| ||||||||||| |
|
|
| T |
9162133 |
tcctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatattt |
9162227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 9219039 - 9219104
Alignment:
| Q |
405 |
aattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
470 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| | || |||||||| || |||||| |||||||||| |
|
|
| T |
9219039 |
aattcctttgaaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggt |
9219104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 9156221 - 9156283
Alignment:
| Q |
408 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
470 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||| | || ||| |||||||||| |
|
|
| T |
9156221 |
tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggt |
9156283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 9170959 - 9171021
Alignment:
| Q |
408 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
470 |
Q |
| |
|
||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| |||||||||| |
|
|
| T |
9170959 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt |
9171021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 9178941 - 9179003
Alignment:
| Q |
408 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
470 |
Q |
| |
|
||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| |||||||||| |
|
|
| T |
9178941 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt |
9179003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 9229920 - 9229974
Alignment:
| Q |
401 |
ctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctc |
455 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| ||| ||||||| ||||||||||| |
|
|
| T |
9229920 |
ctagaattcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctc |
9229974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 37572211 - 37572123
Alignment:
| Q |
190 |
ttactttgtgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccc |
278 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || |||||| ||||||| |||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
37572211 |
ttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccc |
37572123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 37567806 - 37567745
Alignment:
| Q |
280 |
aagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg |
341 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
37567806 |
aagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattg |
37567745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 40568463 - 40568360
Alignment:
| Q |
235 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaa |
334 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| || ||||| || || ||||| | |
|
|
| T |
40568463 |
aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattga |
40568364 |
T |
|
| Q |
335 |
tgaa |
338 |
Q |
| |
|
|||| |
|
|
| T |
40568363 |
tgaa |
40568360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 40591369 - 40591265
Alignment:
| Q |
235 |
aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaa |
334 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||||||| ||||| || || ||||| | |
|
|
| T |
40591369 |
aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattga |
40591270 |
T |
|
| Q |
335 |
tgaat |
339 |
Q |
| |
|
||||| |
|
|
| T |
40591269 |
tgaat |
40591265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 40597863 - 40597775
Alignment:
| Q |
223 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
311 |
Q |
| |
|
||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || | ||||| || ||||||||||| || ||||| |
|
|
| T |
40597863 |
ccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttg |
40597775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 40573076 - 40573016
Alignment:
| Q |
223 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaaga |
283 |
Q |
| |
|
||||||| || ||||||||| || | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
40573076 |
ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaaga |
40573016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 40579533 - 40579445
Alignment:
| Q |
223 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
311 |
Q |
| |
|
||||||| || |||||| ||||| | || ||||||||||||||||||||||| ||||| | || || ||||| |||||||| ||||| |
|
|
| T |
40579533 |
ccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttg |
40579445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 2015288 - 2015349
Alignment:
| Q |
250 |
aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |
|
|
| T |
2015288 |
aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg |
2015349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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