View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19200_high_6 (Length: 288)
Name: NF19200_high_6
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 41862402 - 41862149
Alignment:
| Q |
14 |
gaagggagttatgcagtctcagggtgtaggcttcagaaagtaaaggtccgtcaatgtaggaagaaaatgaaggaactttcatcgctttacttgaggcaag |
113 |
Q |
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| T |
41862402 |
gaagggagttatgcagtctcagggtgtaggcttcagaaagtaaaggtccgtcaatgtaggaagaaaatgaaggaactttcatcactttacttgaggcaag |
41862303 |
T |
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| Q |
114 |
atattcaagcgcatgaaggtgcaattttgaccatgaaatttagtcctgatgggcagtatctggccacaggtggtgaagacggggttgttcgggtgtggca |
213 |
Q |
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| T |
41862302 |
atattcaagcgcacgaaggtgcaattttgaccatgaaatttagtcctgatgggcagtatctggccacaggtggtgaagacggggttgttcgggtgtggca |
41862203 |
T |
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| Q |
214 |
agtggttgaggaggatagatgtaatgaaattcacattccagaaattgacccctc |
267 |
Q |
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| T |
41862202 |
agtggttgaggaggatagatgtaatgaaattcacattccagaaattgacccctc |
41862149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 43761444 - 43761512
Alignment:
| Q |
136 |
aattttgaccatgaaatttagtcctgatgggcagtatctggccacaggtggtgaagacggggttgttcg |
204 |
Q |
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| T |
43761444 |
aatttggactatgaaatttagtcctaatggtcagtatctagcaactggaggtgaagatggtgttgttcg |
43761512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 261
Target Start/End: Original strand, 530541 - 530764
Alignment:
| Q |
38 |
tgtaggcttcagaaagtaaaggtccgtcaatgtaggaagaaaatgaaggaactttcatcgctttacttgaggcaagatattcaagcgcatgaaggtgcaa |
137 |
Q |
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| T |
530541 |
tgtaggattcagcgagttaaggttcgtcaatgcaagaaacaaaggaaggaactttcagctctttatatgggacaagatattcaagcacacgaaggtccaa |
530640 |
T |
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| Q |
138 |
ttttgaccatgaaatttagtcctgatgggcagtatctggccacaggtggtgaagacggggttgttcgggtgtggcaagtggttgaggaggatagatgtaa |
237 |
Q |
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| T |
530641 |
tttttaccatgaaatttagtcctgacggccagtatcttgctagtgccggcgaagatggaattgtgcgattgtggcaagttgttgaggatgagaggcataa |
530740 |
T |
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| Q |
238 |
tgaaattcacattccagaaattga |
261 |
Q |
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| T |
530741 |
tgaaattgacattccagaagttga |
530764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 42371636 - 42371550
Alignment:
| Q |
137 |
attttgaccatgaaatttagtcctgatgggcagtatctggccacaggtggtgaagacggggttgttcgggtgtggcaagtggttgag |
223 |
Q |
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| T |
42371636 |
attttgacgatgaagtttagtcttgatggaaaatatttggctagtggtggtgaagacggcattgttcgtgtgtggcaggtggttgag |
42371550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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