View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19200_low_10 (Length: 241)
Name: NF19200_low_10
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 47688592 - 47688711
Alignment:
| Q |
19 |
gttgagtaattgagagaatttgaaaatgaaatcatatt-attcaatgatatactgagtgaaggaatacaattgagtactcaatgaaatcatattattaaa |
117 |
Q |
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| T |
47688592 |
gttgagtaattgagagaatttgaaaatgaaatcatatttattcaatgatatactgagtgaaggaatacaattgagtactcaatgaaatcatattattaaa |
47688691 |
T |
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| Q |
118 |
tgaacttagtagcggtaatt |
137 |
Q |
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| T |
47688692 |
tgaacttagtagcggtaatt |
47688711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 47688752 - 47688831
Alignment:
| Q |
132 |
gtaattgcatatgtcagtggaaagcaaatagcaacttctttccaaaagtaatctactacatcgaactcgaaagaatccat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
47688752 |
gtaattgcatatgtcagtggaaagcaaatagcaacttctttccaaaagtaatctattacatcgaacttgacagaatccat |
47688831 |
T |
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