View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19200_low_3 (Length: 525)
Name: NF19200_low_3
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 23 - 510
Target Start/End: Original strand, 14433270 - 14433757
Alignment:
| Q |
23 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagatt |
122 |
Q |
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| T |
14433270 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaagtcaccacctctatgtaagatt |
14433369 |
T |
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| Q |
123 |
catttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacac |
222 |
Q |
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| T |
14433370 |
catttttatcatacacagcagcatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgc |
14433469 |
T |
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| Q |
223 |
attgttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
322 |
Q |
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| T |
14433470 |
attgttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtata |
14433569 |
T |
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| Q |
323 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagc |
422 |
Q |
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| T |
14433570 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagc |
14433669 |
T |
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| Q |
423 |
aaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
510 |
Q |
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| T |
14433670 |
gaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 14441631 - 14441791
Alignment:
| Q |
53 |
gagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatttttatcatacacagcaacatcaccac |
152 |
Q |
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| T |
14441631 |
gagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctctatgtaaggtttgttttcatcatacaaagcagcatcaccac |
14441730 |
T |
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| Q |
153 |
cccattgaaacatccttgaatgcaatat-attaattgcatttttgtattcctacaaaataaa |
213 |
Q |
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| T |
14441731 |
cccattgaaatagccttgattgca-tatgatcaatcacatcttggtattcctacaaaataaa |
14441791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 500
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
347 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
446 |
Q |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
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| Q |
447 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
500 |
Q |
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| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
254 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
322 |
Q |
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| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
254 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
342 |
Q |
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| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
250 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
300 |
Q |
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| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
249 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
298 |
Q |
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| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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