View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19200_low_4 (Length: 516)
Name: NF19200_low_4
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 38025333 - 38024909
Alignment:
| Q |
1 |
atcgggtatgcactgagaaacaaagatgtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025333 |
atcgggtatgcactgagaaacaaagatatgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaatct |
38025234 |
T |
|
| Q |
101 |
aacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgttt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
38025233 |
aacatcactatgtaatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtccttagagactcctctgcttgttt |
38025134 |
T |
|
| Q |
201 |
ggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtgttgttga |
300 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38025133 |
ggacttcttctcatccttaaatttggtagcaagaaatgaagaagaagagaaattctttgcttgagacattgatttagcacggtttttaaggtgttgttga |
38025034 |
T |
|
| Q |
301 |
gcttgtcttaaaccatagttccatctgcaaataccagcttggtctttcaaagcctccacaactccaacacttgcagccaccatccaggctttgcttgttg |
400 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025033 |
gcttgtcttaaagcatagttccacctacagataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccaggctttgcttgttg |
38024934 |
T |
|
| Q |
401 |
ctgttgcacgattcatgatttttgg |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38024933 |
ctgttgcacgattcatgatttttgg |
38024909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 38032057 - 38031589
Alignment:
| Q |
1 |
atcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaat |
98 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| || || |||| |
|
|
| T |
38032057 |
atcgggtatgcactgagaaacatagatatgtgaagaataaactttcctcattgaataatattgccgtttaagattacaaaatttacataattaatataat |
38031958 |
T |
|
| Q |
99 |
ctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgt |
198 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38031957 |
ctaacatcactatgtat------------------aagttaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgt |
38031876 |
T |
|
| Q |
199 |
ttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggtgttgtt |
298 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38031875 |
ttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggtgttgtt |
38031776 |
T |
|
| Q |
299 |
gagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttcaaagcctccacaactccaacacttgcagccaccatccaggctttgcttgt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38031775 |
gagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttcaaagcctccacaactccaacacttgcagccaccatccatgctttgcttgt |
38031676 |
T |
|
| Q |
399 |
tgctgttgcacgattcatgatttttggatatc-aaattaagatgtagatagtgttgtttggtaaatatgaaagtgagtttgttgatt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||| |||| | || ||||||||| |
|
|
| T |
38031675 |
tgctgttgcacgattcatgatttttggatatcaaaatttagaagtagacagtgttgtttggtaaataagaaaataagattgttgatt |
38031589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 38003812 - 38003321
Alignment:
| Q |
1 |
atcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatatt------gccgtttgatattacaaactttacatagttta |
92 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| | | |
|
|
| T |
38003812 |
atcgggtatgcactttgaaacatagatatgtgaagaataaactttcctcattgaataataatagtactgtagtttgatattacaaactttacataaataa |
38003713 |
T |
|
| Q |
93 |
tctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctct |
192 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003712 |
tctaatctaatatcactatgta------------------caaattaatcaattgggaccccaacagctcaagtacatgacagtcctcaaagactcctct |
38003631 |
T |
|
| Q |
193 |
gcctgtttggccttcttgtcatccttaaatttggtagcaacaaatgaagaagaagagaaattctttgcttgagacattgatctaacacggtttttaaggt |
292 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38003630 |
gcctgttttgccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattctttgcttgagaaattgatctaacacggtttttaaggt |
38003531 |
T |
|
| Q |
293 |
gttgttgagcttgtcttaaaccatagttccatctgcaaataccagcttggtctttcaaagcctccacaactccaacacttgcagccaccatccaggcttt |
392 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38003530 |
gttgttgagcttgtcttaaagcataattccacctacaaataccagcttgatctttcaaagcttccacaactccaacacttgcagccaccatccatgcttt |
38003431 |
T |
|
| Q |
393 |
gcttgttgctgttgcacgattcatgatttttggatatcaaattaagatgtagatagtgttgtttggtaaatatgaaagtgagtttgttgattgattgatg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003430 |
gcttgttgctgttgcacgattcatgatttttggatatcaaattaagatatagatagtgttgtttggtaaatatgaaagtgagtttgttgattgattgatg |
38003331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 38024870 - 38024824
Alignment:
| Q |
441 |
gtagatagtgttgtttggtaaatatgaaagtgagtttgttgattgat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
38024870 |
gtagatagtgttgtttggtaaatatgaaaatgagattgttgattgat |
38024824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 2912525 - 2912477
Alignment:
| Q |
140 |
atcaattaggaccccagcagctcaagtacatgacagtcctcaaagactc |
188 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
2912525 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
2912477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 373
Target Start/End: Complemental strand, 38033834 - 38033799
Alignment:
| Q |
338 |
cttggtctttcaaagcctccacaactccaacacttg |
373 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38033834 |
cttgatctttcaaagcctccacaactccaacacttg |
38033799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 38022110 - 38022056
Alignment:
| Q |
148 |
ggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttgg |
202 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
38022110 |
ggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttgg |
38022056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 38045148 - 38045095
Alignment:
| Q |
138 |
taatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
191 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
38045148 |
taattaattgggaccccagcaactcaagtacatgaccttcctcaaagattcctc |
38045095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 38069158 - 38069110
Alignment:
| Q |
145 |
ttaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
193 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
38069158 |
ttaggaccccaacagcttaagtacatgactgttctcaaagattcctctg |
38069110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 16005531 - 16005483
Alignment:
| Q |
143 |
aattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
191 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
16005531 |
aattgggaccccaacagcttaagtacatgaccgtcctcaatgactcctc |
16005483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University