View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19200_low_5 (Length: 499)

Name: NF19200_low_5
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19200_low_5
NF19200_low_5
[»] chr8 (4 HSPs)
chr8 (140-482)||(12156038-12156380)
chr8 (140-201)||(19263578-19263639)
chr8 (221-271)||(19263677-19263727)
chr8 (238-270)||(757764-757796)
[»] chr2 (1 HSPs)
chr2 (143-271)||(6909352-6909500)
[»] scaffold1743 (2 HSPs)
scaffold1743 (140-201)||(462-523)
scaffold1743 (235-270)||(575-610)
[»] chr3 (2 HSPs)
chr3 (221-271)||(50066-50116)
chr3 (140-201)||(50154-50215)
[»] chr4 (1 HSPs)
chr4 (140-201)||(22681437-22681497)
[»] chr1 (1 HSPs)
chr1 (223-273)||(47782844-47782894)
[»] scaffold0131 (1 HSPs)
scaffold0131 (235-271)||(17316-17352)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 140 - 482
Target Start/End: Complemental strand, 12156380 - 12156038
Alignment:
Q  140 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagactcacaacatattttcgcctcaagtatcgagaagttcta 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12156380 aaagagcaaccacataagtgtaagagtttgttcaacttccactgatctattcaatgttagactcacaacatattttcgcctcaagtatcgagaagttcta 12156281  T
Q  240 gcccgtgcttggcacgggtccacatactagttatcatataatttcatggtaagttcagtaatatgaggagtaataacatcgaaatnnnnnnnttgattcc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||    
T  12156280 gcccgtgcttggcacgggtccacatactagttatcatataatttcatggtaagttcagcaatatgaggagtaataacatcgaaataaaaaaattgattcc 12156181  T
Q  340 accatgggtaagttccagaaactgttattgacaataataatcgttagtaagtgataattgaatgctacatgattgcaatgatatttaatatgttaggatg 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12156180 accatgggtaagttccagaaactgttattgacaataataatcgttagtaagtgataattgaatgctacatgattgcaatgatatttaatatgttaggatg 12156081  T
Q  440 cgagtttaaactcatagttctcaaatccagtgtgtgtgagttt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12156080 cgagtttaaactcatagttctcaaatccagtgtgtgtgagttt 12156038  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 19263578 - 19263639
Alignment:
Q  140 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 201  Q
    ||||| |||||| | |||||||||||||||||||||||||| || |||||||||||||||||    
T  19263578 aaagaacaaccaaaaaagtgtaagagtttgttcaacttccattgttctattcaatgttagac 19263639  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 19263677 - 19263727
Alignment:
Q  221 caagtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 271  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||||    
T  19263677 caagtatggataaattctagcccgtgcttggcacgggtccacatactagtt 19263727  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 757796 - 757764
Alignment:
Q  238 tagcccgtgcttggcacgggtccacatactagt 270  Q
    |||||||||||||||||||||||||||||||||    
T  757796 tagcccgtgcttggcacgggtccacatactagt 757764  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 6909500 - 6909352
Alignment:
Q  143 gagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac--------------------tcacaacatattttcgcctca 222  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||                    |||||||||||| ||||||||    
T  6909500 gagcaaccacacaagtgtaagagtttgttcaacttccattgttctattcaatgttagaccgtaactgacacttgataaatcacaacatattctcgcctca 6909401  T
Q  223 agtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 271  Q
    ||||| ||||| |||||| |||| ||||||||||||||| |||||||||    
T  6909400 agtatggagaaattctagtccgtacttggcacgggtccaaatactagtt 6909352  T

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Target: scaffold1743 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 462 - 523
Alignment:
Q  140 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 201  Q
    |||||||||||| | |||||||||||||| ||||||||||| || |||||||||||||||||    
T  462 aaagagcaaccaaaaaagtgtaagagtttattcaacttccattgttctattcaatgttagac 523  T

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Target: scaffold1743; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 575 - 610
Alignment:
Q  235 ttctagcccgtgcttggcacgggtccacatactagt 270  Q
    ||||||||||||||||||||||||||||||||||||    
T  575 ttctagcccgtgcttggcacgggtccacatactagt 610  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 50116 - 50066
Alignment:
Q  221 caagtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 271  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||||    
T  50116 caagtatggataaattctagcccgtgcttggcacgggtccacatactagtt 50066  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 50215 - 50154
Alignment:
Q  140 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 201  Q
    |||||||||||| | |||||||||| ||||||||||||||| || |||||| ||||||||||    
T  50215 aaagagcaaccaaaaaagtgtaagaatttgttcaacttccattgttctatttaatgttagac 50154  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 22681437 - 22681497
Alignment:
Q  140 aaagagcaaccacacaagtgtaagagtttgttcaacttccactgatctattcaatgttagac 201  Q
    |||||||||||||| ||| ||||||||||| |||||||||| || | |||||||||||||||    
T  22681437 aaagagcaaccacataag-gtaagagtttgctcaacttccattgttttattcaatgttagac 22681497  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 47782894 - 47782844
Alignment:
Q  223 agtatcgagaagttctagcccgtgcttggcacgggtccacatactagttat 273  Q
    ||||| ||||| |||| |||||||||||||||| || ||||||||||||||    
T  47782894 agtatggagaaattcttgcccgtgcttggcacgagttcacatactagttat 47782844  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 17352 - 17316
Alignment:
Q  235 ttctagcccgtgcttggcacgggtccacatactagtt 271  Q
    |||||||||||| |||||||||||||||| |||||||    
T  17352 ttctagcccgtgtttggcacgggtccacacactagtt 17316  T

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