View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19200_low_6 (Length: 340)
Name: NF19200_low_6
Description: NF19200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19200_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 53672299 - 53672611
Alignment:
| Q |
13 |
ggacatcatccccaaaaatcatagagtaatcatccaattcatcagaagtgaactttgggattctccaactctttccaacttcatagtcttgtccattggt |
112 |
Q |
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| T |
53672299 |
ggacatcatacccaaaaatcatagagtaatcatccaattcatcagaagtgaactttgggattctccaactctttccaacttcatagtcttgtccattggt |
53672398 |
T |
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| Q |
113 |
tagcagctctaacacctgtgtataatcaaaaagaagaaaacacaagaaaattttagtgaagtgtgatcttgttgagacacaaataaaccttaaggtctgt |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53672399 |
tagcagctctaacacctgtgtataatcaaaatgaagaaaacacatgaaaattttagtgaagtgtgatcttgttaagacacaaataaaccttaaggtctgt |
53672498 |
T |
|
| Q |
213 |
ttggtgtttgaaaaaatgttttctatttttatttcgataattaaaatgaaaatagaaaacgttttctcaaaccaaacagaaccactaaacatgaaaacat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53672499 |
ttggtgtttgaaaaaatgttttctatttttatttcgataattaaaatgaaaatagaaaacgttttctcaaaccaaacagaaccactaaacatgaaaacat |
53672598 |
T |
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| Q |
313 |
attggttgttatt |
325 |
Q |
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|| |||||||||| |
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| T |
53672599 |
atcggttgttatt |
53672611 |
T |
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