View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19201_high_11 (Length: 298)

Name: NF19201_high_11
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19201_high_11
NF19201_high_11
[»] chr5 (4 HSPs)
chr5 (13-172)||(9625417-9625573)
chr5 (183-274)||(9625263-9625354)
chr5 (13-139)||(39305477-39305600)
chr5 (13-120)||(17540022-17540129)
[»] chr3 (1 HSPs)
chr3 (13-139)||(45903375-45903498)
[»] chr1 (6 HSPs)
chr1 (13-139)||(32495743-32495866)
chr1 (13-139)||(19595987-19596110)
chr1 (13-139)||(46336370-46336493)
chr1 (18-120)||(43632911-43633013)
chr1 (13-139)||(43997170-43997293)
chr1 (30-139)||(11692536-11692643)
[»] chr6 (3 HSPs)
chr6 (13-139)||(23594538-23594661)
chr6 (13-139)||(26377868-26377991)
chr6 (13-139)||(14277230-14277353)
[»] chr7 (5 HSPs)
chr7 (13-120)||(14792372-14792479)
chr7 (13-139)||(4926120-4926243)
chr7 (13-114)||(41985304-41985405)
chr7 (13-139)||(19680998-19681121)
chr7 (18-139)||(7260271-7260389)
[»] chr4 (4 HSPs)
chr4 (13-139)||(12240625-12240748)
chr4 (13-139)||(49620642-49620765)
chr4 (13-139)||(23666604-23666727)
chr4 (47-139)||(24851008-24851097)
[»] chr2 (1 HSPs)
chr2 (13-139)||(38992767-38992890)
[»] scaffold1603 (1 HSPs)
scaffold1603 (13-139)||(940-1063)
[»] chr8 (1 HSPs)
chr8 (28-139)||(13083609-13083717)
[»] scaffold0027 (1 HSPs)
scaffold0027 (13-95)||(21913-21998)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 9625573 - 9625417
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  9625573 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgcta-- 9625476  T
Q  113 gctgcaaaaaactgtgtgaatttgctagatcagctgatcctccaccacactccatcatta 172  Q
     |||| | ||||||||||||||||||| || ||||||||||||||||||||| |||||||    
T  9625475 -ctgcgacaaactgtgtgaatttgctacattagctgatcctccaccacactctatcatta 9625417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 9625354 - 9625263
Alignment:
Q  183 agaaagggaacatcttcaaatctgaaagcaaagggaacatcttctatcttagaaaatatgaccctaacatttctcttaatttcctttatata 274  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9625354 agaaagggaacatcttcaaatctgaaagcaaaggtttcatcttctatcttagaaaatatgaccctaacatttctcttattttcctttatata 9625263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 39305600 - 39305477
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||| |||| | | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  39305600 tgaagtgaacggttaagatttgacattgtatgaaattgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctact 39305501  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  39305500 gcggc---aaactgtgtgaatttgcta 39305477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 17540022 - 17540129
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||| | |||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  17540022 tgaagtgaacggttaagatttgacattgtgtgaaattgttgaaatttgtgctgtgaattggaaccgtcagatcatagattgatggctgagatttgctact 17540121  T
Q  113 gctgcaaa 120  Q
    || |||||    
T  17540122 gcggcaaa 17540129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 45903375 - 45903498
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  45903375 tgaagtgaacggttaagatctgacattgtgtaaaattgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 45903474  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  45903475 gcggc---aaactgtgtgaatttgcta 45903498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 32495866 - 32495743
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  32495866 tgaagtgaacggttaagatctgacattgtgtgaaattattgaaatttgtgttgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 32495767  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  32495766 gcggc---aaactgtgtgaatttgcta 32495743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 19596110 - 19595987
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19596110 tgaagtgaacggttaagatctgatattgtgtaaaattgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 19596011  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  19596010 gcggc---aaactgtgtgaatttgcta 19595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 46336370 - 46336493
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  46336370 tgaagtgaacggttaagatctgacattgtgtgaaattattgaaatttgtgctgtgaattggaaccgtcaaatcatggattgatggctgagatttgctact 46336469  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  46336470 gcggc---aaactgtgtgaatttgcta 46336493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 43632911 - 43633013
Alignment:
Q  18 tgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgctgc 117  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||| | |||||||||||||||||||||||||||||| | ||| ||||||||| || ||    
T  43632911 tgaacggttaagatctgacattgtgtgaaattgttgaatttcgtgctgtgaattggaaccgtcagatcatggattgatggttgagatttgctacagcagc 43633010  T
Q  118 aaa 120  Q
    |||    
T  43633011 aaa 43633013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 43997293 - 43997170
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||| |||||||||| ||||||| |||| |||||||||||||||| |||| | ||||||| ||||||||||||||| |||||| ||||| |||||| |||    
T  43997293 tgaaatgaacggttatgatctgatattgtgtgaaattgttgaaatatgtgctgtgaattgaaaccgtcagatcatgaattgatggctgagatttgcaact 43997194  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    ||    | |||||||||||||||||||    
T  43997193 gcg---ataaactgtgtgaatttgcta 43997170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 11692536 - 11692643
Alignment:
Q  30 atctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccg-tcagatcatggattgatagctgatatttgctactgctgcaaaaaactgtg 128  Q
    |||||| |||| ||||||||||||||||| || || |||||| ||| || |||| | |||||||||| ||||| |||| ||||| | ||   |||||| |    
T  11692536 atctgatattgtgtgaaattgttgaaatcggtattgtgaatttgaaacgatcaggttatggattgatggctgagattttctactacagc---aaactgcg 11692632  T
Q  129 tgaatttgcta 139  Q
    |||||||||||    
T  11692633 tgaatttgcta 11692643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 23594661 - 23594538
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  23594661 tgaagtgaacggttaagatatgacattgtgtgaaattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 23594562  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  23594561 gcggc---aaactgtgtgaatttgcta 23594538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 26377868 - 26377991
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||  |||| ||||||||||    
T  26377868 tgaagtgaatggttaagatctgacattgtgtgaaattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatgactgagatttgctact 26377967  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  26377968 gcggc---aaactgtgtgaatttgcta 26377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 14277353 - 14277230
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| || |||||||||||||  ||| | |||||||||| |||||||||||| |||||  ||||| ||||||||||    
T  14277353 tgaagtgaacggttaagatctgacattgtgttaaattgttgaaattcgtgctgtgaattggaatcgtcagatcatgaattgacggctgagatttgctact 14277254  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  14277253 gcggc---aaactgtgtgaatttgcta 14277230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 14792479 - 14792372
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  14792479 tgaagtgaacggttaagatctgacattgtgtgaaattgttgaaatttgtgttgtgaattggaaccgtcagatcatagattgatggctgagatttgctact 14792380  T
Q  113 gctgcaaa 120  Q
    || |||||    
T  14792379 gcggcaaa 14792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 4926243 - 4926120
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||| ||||||| ||||||||||||||| ||||| |||||||||     
T  4926243 tgaagtgaacggttaagatctgacattgtgtgaaattgttgaaatttgtgctacgaattagaaccgttagatcatggattgatggctgagatttgctaca 4926144  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  4926143 gcagc---aaactgtgtgaatttgcta 4926120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 41985304 - 41985405
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  41985304 tgaagtgagcggtcaagatctgacattgtatgaaattgttgaaatccgtgttgtgaattggaaccgtcggatcatggattgatggctgagatttgctact 41985403  T
Q  113 gc 114  Q
    ||    
T  41985404 gc 41985405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 19680998 - 19681121
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||| |||| ||||||||| ||| |||| ||||||||||| |||| | |||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19680998 tgaaatgaatggttaagatttgatattgtgtgaaattgttaaaatttatgttgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 19681097  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  19681098 gcggc---aaactgtgtgaatttgcta 19681121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 7260389 - 7260271
Alignment:
Q  18 tgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgctgc 117  Q
    |||| ||||||||||||||||||  |||||||||| |||||| || | | ||||| ||| |||||||||| ||||||| ||||| |||| ||||||| ||    
T  7260389 tgaatggttaagatctgacattgtatgaaattgttaaaatctttgctgtaaattgaaacagtcagatcatagattgatggctgagatttactactgcggc 7260290  T
Q  118 aaaaaactgtgtgaatttgcta 139  Q
       |||||||||||||||||||    
T  7260289 ---aaactgtgtgaatttgcta 7260271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 12240625 - 12240748
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| | || | |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12240625 tgaagtgaacgattaagatctgacattgtgtgaaattgttgaaatttatgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctact 12240724  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  12240725 gcggc---aaactgtgtgaatttgcta 12240748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 49620642 - 49620765
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||  ||||||||||||||||| |||||||||||||||| |||| | | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  49620642 tgaagtgaaacgttaagatctgacattgtgtgaaattgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctact 49620741  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   ||||| |||||||||||||    
T  49620742 gcggc---aaactatgtgaatttgcta 49620765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 23666727 - 23666604
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||  |||||||||||||| ||| ||||||||||  |||| |||| || ||    
T  23666727 tgaagtgaacggtcaagatctgacattgtgtgaaattgttgaaatccgtgttgcgaattggaaccgtcggattatggattgatgactgagattttctcct 23666628  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
     | ||   |||||||||||||||||||    
T  23666627 acggc---aaactgtgtgaatttgcta 23666604  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 24851008 - 24851097
Alignment:
Q  47 attgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgctgcaaaaaactgtgtgaatttgcta 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||| |   ||||||||||||||||||||    
T  24851008 attgttgaaatctgtgttgtgaattggaaccgtcagatcatggattgatggatgagatttactactgcgg---aaaactgtgtgaatttgcta 24851097  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 38992767 - 38992890
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||| |||| ||||||||| ||||||| ||||| ||||||||||    
T  38992767 tgaagtgaacggttaagatctgacattgtgtgaaattattgaaatctgtgctttgaattgcaaccttcagatcatagattgatggctgagatttgctact 38992866  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
    || ||   |||||||||||||||||||    
T  38992867 gcggc---aaactgtgtgaatttgcta 38992890  T

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Target: scaffold1603 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 940 - 1063
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctact 112  Q
    ||||||||||||| |||||||||||||| || |||||||||||||| ||| | ||||||||||||||||||||||| |||||| | ||| ||||||||      
T  940 tgaagtgaacggtcaagatctgacattgtgtaaaattgttgaaatccgtgctgtgaattggaaccgtcagatcatgaattgatggttgagatttgcta-- 1037  T
Q  113 gctgcaaaaaactgtgtgaatttgcta 139  Q
     |||| | |||||||||||||||||||    
T  1038 -ctgcgacaaactgtgtgaatttgcta 1063  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 13083717 - 13083609
Alignment:
Q  28 agatctgacattgcgtgaaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgctgcaaaaaactgt 127  Q
    ||||||||||||| ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||| ||||| |||||||||||| ||   |||||||    
T  13083717 agatctgacattgtgtgaaattgttgaaatccgtgctgtgaattggaaccatcagatcatggattgatcgctgagatttgctactgcggc---aaactgt 13083621  T
Q  128 gtgaatttgcta 139  Q
    || |||||||||    
T  13083620 gtaaatttgcta 13083609  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 21913 - 21998
Alignment:
Q  13 tgaagtgaacggttaagatctgacattgcgtgaaattgttg---aaatctgtgttatgaattggaaccgtcagatcatggattgat 95  Q
    |||| |||||||||||||||| | |||| || ||||| |||   |||||||| || ||||||||||||||||||||||||||||||    
T  21913 tgaattgaacggttaagatctaatattgtgtaaaattattgttaaaatctgtattgtgaattggaaccgtcagatcatggattgat 21998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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