View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_high_2 (Length: 650)
Name: NF19201_high_2
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_high_2 |
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| [»] scaffold0140 (5 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 331 - 638
Target Start/End: Original strand, 36930 - 37239
Alignment:
| Q |
331 |
gtgtcctccccatcagttccttttgcttggttgttcttctgaatattctcattccaattcactagacctgtcaccaactcccttgtaaccttctctagtt |
430 |
Q |
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| T |
36930 |
gtgtccttcccatcagttccttttgcttggttgttcttctgaatattctcattccaattcactagacctgtgaccaactcccttgtaaccttttctagtt |
37029 |
T |
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| Q |
431 |
cctctggtggaagcatcttcaggtctctcaacattgcttcagcttgactctctgatggacccccaacagtcatgacattcttgccttg-aacttttgcaa |
529 |
Q |
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| T |
37030 |
cctctggtggaagcatcttcaggtctctcaacattgcttcagcttgactctctgatggacccccaacagtcatgaccttcttgccttgtaacttttgcaa |
37129 |
T |
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| Q |
530 |
ta-ttcttttgacatttcaacaaaccagtaataacatgagttgtgtcatcaacaaagtcct-gtggcaatggctggttctgagttgcttcctttggacca |
627 |
Q |
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| T |
37130 |
tatttcttttgacatttcaacaaaccagtaataacatcagttgtgtcatcaa-aatttgatggtggcaatggctggttctgagttgcttcctttagacca |
37228 |
T |
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| Q |
628 |
cttatgttctg |
638 |
Q |
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| T |
37229 |
cttatgttctg |
37239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 103 - 263
Target Start/End: Original strand, 36735 - 36900
Alignment:
| Q |
103 |
ggtcattacaaacatcataatgtaccaaaacataacataacaggtccaatagcaccaaaacatccnnnnnnn---ggt-gctaaccaaa-ttacagtttc |
197 |
Q |
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| T |
36735 |
ggtcattaccaacatcataatgtaccaaaacataacataacaggtccaatagcaccaaaacatccaaaaaaaaaaggtagctaaccaaaattacagtttc |
36834 |
T |
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| Q |
198 |
aacataagcatcatattgcaactaataggttcatagccaaaaagtaaagtaaaacttaaacattaa |
263 |
Q |
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| T |
36835 |
aacataagcatcatagtgcaactaataggttcatagccaaaaagtaaagtaaaacttaaacattaa |
36900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36578 - 36707
Alignment:
| Q |
1 |
tatagttagcaaagttgtagacataattgtgttctttcataccaaaatggaccaaaatggtcattactaacaccataacgtaccaagacataacaccaaa |
100 |
Q |
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| T |
36578 |
tatagtaagcaaagttgtagtcataattatcttgtttcatagcaaaatgcaccaaaatggtcattactaacaccataatgtaccaagacataacaccaaa |
36677 |
T |
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| Q |
101 |
atggtcattacaaacatcataatgtaccaa |
130 |
Q |
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| T |
36678 |
atggtcattacaaacaccataatgtaccaa |
36707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 36627 - 36672
Alignment:
| Q |
94 |
caccaaaatggtcattacaaacatcataatgtaccaaaacataaca |
139 |
Q |
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| T |
36627 |
caccaaaatggtcattactaacaccataatgtaccaagacataaca |
36672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 633
Target Start/End: Original strand, 37234 - 37264
Alignment:
| Q |
603 |
gttctgagttgcttcctttggaccacttatg |
633 |
Q |
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| T |
37234 |
gttctgagttgcttcctttggaccacttatg |
37264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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