View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_high_20 (Length: 209)
Name: NF19201_high_20
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_high_20 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 33904334 - 33904235
Alignment:
| Q |
97 |
ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaattgtggtggtttc |
196 |
Q |
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| T |
33904334 |
ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaactggaaacataatattaatgtgacaccaattgtggcggtttc |
33904235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 33865821 - 33865735
Alignment:
| Q |
98 |
tcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaat |
184 |
Q |
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| T |
33865821 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacaccaat |
33865735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 33748683 - 33748641
Alignment:
| Q |
125 |
aactttctcaactcatccaccttcgttgaatgggaaacataat |
167 |
Q |
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| T |
33748683 |
aactttttcaactcattcaccttggttgaatgggaaacataat |
33748641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 33834803 - 33834761
Alignment:
| Q |
125 |
aactttctcaactcatccaccttcgttgaatgggaaacataat |
167 |
Q |
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| T |
33834803 |
aactttttcaactcattcaccttggttgaatgggaaacataat |
33834761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 148719 - 148627
Alignment:
| Q |
97 |
ttcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaatgggaaacataatattaatgtgacaccaattgtgg |
189 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
148719 |
ttcatgaaattattagacctcaacctcgaactttctcaactcattcaccttcgttgaatgggaaacataatattaacgcgacaccaattgtgg |
148627 |
T |
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