View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19201_high_3 (Length: 584)

Name: NF19201_high_3
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19201_high_3
NF19201_high_3
[»] chr3 (2 HSPs)
chr3 (16-572)||(26452896-26453464)
chr3 (515-584)||(26452805-26452874)
[»] chr4 (11 HSPs)
chr4 (349-492)||(23676325-23676469)
chr4 (494-584)||(21538924-21539014)
chr4 (510-577)||(5979786-5979853)
chr4 (494-584)||(4873037-4873127)
chr4 (510-584)||(3703584-3703658)
chr4 (509-551)||(12329026-12329068)
chr4 (504-550)||(21538844-21538890)
chr4 (510-552)||(25812263-25812305)
chr4 (499-536)||(2605367-2605404)
chr4 (529-574)||(48292387-48292432)
chr4 (509-550)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (189-246)||(47680531-47680588)
chr1 (493-577)||(49632910-49632995)
chr1 (516-550)||(11985458-11985492)
chr1 (494-584)||(30018564-30018653)
chr1 (77-159)||(47680406-47680488)
chr1 (499-551)||(30018687-30018740)
chr1 (494-574)||(36724171-36724251)
[»] chr8 (2 HSPs)
chr8 (494-584)||(25939281-25939371)
chr8 (503-551)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (494-572)||(11425-11503)
scaffold0110 (494-572)||(19162-19240)
[»] chr7 (5 HSPs)
chr7 (515-584)||(27866683-27866752)
chr7 (499-543)||(36390712-36390756)
chr7 (510-584)||(48073016-48073090)
chr7 (520-572)||(27747373-27747425)
chr7 (515-547)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (516-572)||(30351451-30351507)
chr6 (503-550)||(13613749-13613796)
chr6 (510-577)||(16396652-16396719)
chr6 (494-584)||(3806174-3806263)
[»] chr5 (10 HSPs)
chr5 (499-551)||(10818875-10818927)
chr5 (494-553)||(10818787-10818845)
chr5 (494-584)||(14613533-14613623)
chr5 (513-558)||(4639521-4639566)
chr5 (494-577)||(28976687-28976770)
chr5 (510-584)||(6706273-6706347)
chr5 (497-550)||(4192001-4192054)
chr5 (499-551)||(8367019-8367071)
chr5 (227-255)||(11727230-11727258)
chr5 (510-550)||(35924595-35924635)
[»] chr2 (3 HSPs)
chr2 (499-581)||(13793669-13793751)
chr2 (503-551)||(37096596-37096644)
chr2 (515-584)||(39994520-39994590)


Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 572
Target Start/End: Complemental strand, 26453464 - 26452896
Alignment:
Q  16 cctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatatt 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26453464 cctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatatt 26453365  T
Q  116 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaatcct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||       ||||||||||||||||||||    
T  26453364 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaatcct 26453265  T
Q  204 acatggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgccttagaagctctaagattgatcggcacacccctttccattgc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  26453264 acatggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttccattgt 26453165  T
Q  304 tcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 403  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453164 tcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 26453065  T
Q  404 tttaacaattcacagggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgct 503  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26453064 tttaacaattcacggggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgtt 26452965  T
Q  504 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 572  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  26452964 ttttggacatccattatttcctagaaacacatgaaaatgaccaaaaatactccagcaatagttaactac 26452896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 515 - 584
Target Start/End: Original strand, 26452805 - 26452874
Alignment:
Q  515 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452805 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 26452874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 349 - 492
Target Start/End: Original strand, 23676325 - 23676469
Alignment:
Q  349 aaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaa-caattcacagggtccgtgagcatttacccttaagtcagt 447  Q
    |||| ||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||    
T  23676325 aaaggtggactaaattctaggattcaatgcttgtttttctcactccatgtgaaattttaagcaattcaaggggtccgtgagcatttaccgtcaagtcagt 23676424  T
Q  448 gatgggagacaacagcacacaaagcccagtaggacaaaaataaag 492  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  23676425 gatgggagacaccagcacagaaatcccagtaggacaaaaataaag 23676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 584
Target Start/End: Complemental strand, 21539014 - 21538924
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    ||||||||||||||  || |||| ||||| ||||||||||| | ||||||||||||||||||||    ||||||| |||||||||||||||    
T  21539014 gagaattgctttttaaactttcaatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttata 21538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 577
Target Start/End: Complemental strand, 5979853 - 5979786
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 577  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||| |  ||||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactaccgctg 5979786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 584
Target Start/End: Original strand, 4873037 - 4873127
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    ||||||| |||||| ||| | |||| ||||||| ||||||||| |||||| |||||||||  ||||  |||||||||||||||| ||||||    
T  4873037 gagaatttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttata 4873127  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 3703584 - 3703658
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |  ||||  ||||||||||||| || ||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttata 3703658  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 12329068 - 12329026
Alignment:
Q  509 gacattcattgttttctagaaacacatgaaaatgaccaaaaac 551  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  12329068 gacatccattgttttttagaaacacatgaaaatgatcaaaaac 12329026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 550
Target Start/End: Original strand, 21538844 - 21538890
Alignment:
Q  504 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  21538844 tttttgacatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 552
Target Start/End: Original strand, 25812263 - 25812305
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaaca 552  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaaca 25812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 536
Target Start/End: Original strand, 2605367 - 2605404
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaacacatg 536  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatg 2605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 48292432 - 48292387
Alignment:
Q  529 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 574  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||    
T  48292432 aacacatgtaaatgaccaaaaacactccagcggtagttaactaccg 48292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 53860936 - 53860895
Alignment:
Q  509 gacattcattgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
Q  189 tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa 246  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47680531 tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa 47680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 577
Target Start/End: Complemental strand, 49632995 - 49632910
Alignment:
Q  493 cgagaattgctttttg-gacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 577  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||||| ||  |   ||||||||||||||||    
T  49632995 cgagaattgctttttttgacatccattgatttctagaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctg 49632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 550
Target Start/End: Original strand, 11985458 - 11985492
Alignment:
Q  516 attgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    |||||||||||||||||||||||||||||||||||    
T  11985458 attgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 584
Target Start/End: Original strand, 30018564 - 30018653
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    ||||||||||||||| |||  |||||||| |||||| | ||||||||||| ||||||||| | |||  |||||||||| |||  |||||||    
T  30018564 gagaattgctttttg-acaaccattgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttata 30018653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
Q  77 cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat 159  Q
    ||||||| |||||| |||  | ||||||||||||||| ||||  || |||||||||| | ||||  |||||||||||||||||    
T  47680406 cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat 47680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 551
Target Start/End: Complemental strand, 30018740 - 30018687
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaa-cacatgaaaatgaccaaaaac 551  Q
    ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaac 30018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 574
Target Start/End: Original strand, 36724171 - 36724251
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 574  Q
    ||||||| ||||||  |||||  ||||||||||||| |  ||| ||||||||||||||| |||||   |||||||||||||    
T  36724171 gagaattcctttttttacatttgttgttttctagaagcgtatggaaatgaccaaaaacatcccagtggtagttaactaccg 36724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 494 - 584
Target Start/End: Original strand, 25939281 - 25939371
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||| ||| |||||||||||| | |||  |||||||||||||||||||||||    
T  25939281 gagaattgttttttgaatattcattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttata 25939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 9041003 - 9040955
Alignment:
Q  503 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 551  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||    
T  9041003 ttttttgacattcattgtttcctagaaacacatggaaatgactaaaaac 9040955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 572
Target Start/End: Original strand, 11425 - 11503
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 572  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  11425 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 11503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 572
Target Start/End: Original strand, 19162 - 19240
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 572  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  19162 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 19240  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 27866752 - 27866683
Alignment:
Q  515 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||| ||||||||| |||||||||||| |||||| || | | ||||||||||||||||| ||||||    
T  27866752 cattgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttata 27866683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 36390712 - 36390756
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaacacatgaaaatga 543  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  36390712 ttgcttttttgacatttagtgttttctagaaacacatgaaaatga 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 48073016 - 48073090
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||| ||||||  |||||||||||| ||||||||||||| || | ||| |||||||||||   ||||||||||    
T  48073016 acattctttgtttattagaaacacatggaaatgaccaaaaatactctagcgatagttaactattactggcttata 48073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 572
Target Start/End: Original strand, 27747373 - 27747425
Alignment:
Q  520 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 572  Q
    ||||||||||||||||||||||||| ||||| | | ||||  |||||||||||    
T  27747373 ttttctagaaacacatgaaaatgactaaaaataactcagcggtagttaactac 27747425  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Complemental strand, 39933664 - 39933632
Alignment:
Q  515 cattgttttctagaaacacatgaaaatgaccaa 547  Q
    |||| ||||||||||||||||||||||||||||    
T  39933664 cattattttctagaaacacatgaaaatgaccaa 39933632  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 30351451 - 30351507
Alignment:
Q  516 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 572  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  30351451 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 30351507  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 503 - 550
Target Start/End: Original strand, 13613749 - 13613796
Alignment:
Q  503 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  13613749 tttttcgacatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 510 - 577
Target Start/End: Complemental strand, 16396719 - 16396652
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 577  Q
    |||| ||||||||| |||||| || |||||||||| |||||||||||| |  ||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactaccgctg 16396652  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 584
Target Start/End: Original strand, 3806174 - 3806263
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||||||||   |||| ||| ||||||||||||||||| |||| ||||||||||| |||| ||||| | |||||| |||| ||||||    
T  3806174 gagaattgcttttgtcacatccatcgttttctagaaacacat-aaaaagaccaaaaacatcccaacaataatcaactacagctgacttata 3806263  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 551
Target Start/End: Complemental strand, 10818927 - 10818875
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 551  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgaccaaaaac 10818875  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 553
Target Start/End: Original strand, 10818787 - 10818845
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacac 553  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||    
T  10818787 gagaattgcttttttaacat-cattgttttctagaaacacattaaaattaccaaaaacac 10818845  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 584
Target Start/End: Original strand, 14613533 - 14613623
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||||||||    ||| |||||||| |||||||||||||||||| ||||||||||| ||| |  |||||| | || |||||||||||    
T  14613533 gagaattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttata 14613623  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 4639566 - 4639521
Alignment:
Q  513 ttcattgttttctagaaacacatgaaaatgaccaaaaacaccccag 558  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4639566 ttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccag 4639521  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 577
Target Start/End: Complemental strand, 28976770 - 28976687
Alignment:
Q  494 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 577  Q
    |||||||||||||   |||| ||||||||  |||||| |||||||||||| ||||||||  | | | |||||||||||||||||    
T  28976770 gagaattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactaccgctg 28976687  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 6706273 - 6706347
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||||||||  || |||||||||||||| ||||||||||   ||||  ||||||||||||| || ||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttata 6706347  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 4192054 - 4192001
Alignment:
Q  497 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    ||||||| |||  |||| |||||||| ||| |||||||||||||||||||||||    
T  4192054 aattgctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 551
Target Start/End: Original strand, 8367019 - 8367071
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 551  Q
    ||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgaccaaaaac 8367071  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
Q  227 tttagcagctaagaacaaaaaatttgttc 255  Q
    |||||||||||||||||||||||||||||    
T  11727258 tttagcagctaagaacaaaaaatttgttc 11727230  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 35924595 - 35924635
Alignment:
Q  510 acattcattgttttctagaaacacatgaaaatgaccaaaaa 550  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  35924595 acatccattattttctagaaaaacatgaaaatgaccaaaaa 35924635  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 581
Target Start/End: Original strand, 13793669 - 13793751
Alignment:
Q  499 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggctt 581  Q
    ||||| ||| ||||| ||||||||  |||||||| |||| ||||||||||||||||||| |  ||||||||||| | ||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggctt 13793751  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 551
Target Start/End: Original strand, 37096596 - 37096644
Alignment:
Q  503 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 551  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||    
T  37096596 ttttttgaccttcattgttttctagaaacacatggaaatgatcaaaaac 37096644  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 584
Target Start/End: Complemental strand, 39994590 - 39994520
Alignment:
Q  515 cattgttttctagaaacacatgaaaatga-ccaaaaacaccccagcaatagttaactaccgctggcttata 584  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| ||| |||||||||||| || ||||||    
T  39994590 cattgttttctagaaacacatggaaatgacccaaaaaaattccaacaacagttaactaccgttgacttata 39994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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