View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19201_high_8 (Length: 334)
Name: NF19201_high_8
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_high_8 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0477 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 78 - 330
Target Start/End: Complemental strand, 699 - 447
Alignment:
| Q |
78 |
ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagta |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
699 |
ggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagca |
600 |
T |
|
| Q |
178 |
gtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagt |
277 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
599 |
gtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagt |
500 |
T |
|
| Q |
278 |
tatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
499 |
tatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 78 - 330
Target Start/End: Complemental strand, 4649682 - 4649430
Alignment:
| Q |
78 |
ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagta |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4649682 |
ggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagca |
4649583 |
T |
|
| Q |
178 |
gtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagt |
277 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4649582 |
gtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagt |
4649483 |
T |
|
| Q |
278 |
tatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4649482 |
tatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
4649430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
146 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
206 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || ||||||||||| || ||||||||||| |
|
|
| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
179 |
tagtttttggtggagatttcagacagattttgc |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University