View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19201_high_9 (Length: 330)
Name: NF19201_high_9
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38752159 - 38751989
Alignment:
| Q |
18 |
gtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctttgttaggcaactaaatacatatgtgagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38752159 |
gtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctttgttaggcaactaaatacatatgtgagaa |
38752060 |
T |
|
| Q |
118 |
tcttcaaattctaacttctatgttctctatatccttattcattgttttagtaagtatcttctttagttagt |
188 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38752059 |
tcttcaaattctaacttctatgttctatatatccttattcattgttttagtaagtatcttctttagttagt |
38751989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 38751924 - 38751816
Alignment:
| Q |
212 |
ttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgatgttgtgt |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38751924 |
ttctataagcttttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacggaatacagtcacatgtatcgatgttgtgt |
38751825 |
T |
|
| Q |
312 |
tggtctctg |
320 |
Q |
| |
|
|||| |||| |
|
|
| T |
38751824 |
tggtgtctg |
38751816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 12478780 - 12478731
Alignment:
| Q |
39 |
gctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
88 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||||||||||| |
|
|
| T |
12478780 |
gctagagaccttctgccgaagtttttcaagcataacaatttctcaagctt |
12478731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 3020507 - 3020622
Alignment:
| Q |
205 |
aagttatttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgat |
304 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||| ||||||||||||| || |
|
|
| T |
3020507 |
aagttatttatataagctcttcaaaacagtttcgcaagctatgaagcactcataataatttgagaaaatggaacagcggaataaagtcacatgtatcaat |
3020606 |
T |
|
| Q |
305 |
gttgtgttggtctctg |
320 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
3020607 |
gtcgtgttggtgtctg |
3020622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 31815642 - 31815675
Alignment:
| Q |
241 |
agctatgaagcactgacaataatttgagaaaatg |
274 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
31815642 |
agctatgaagcactgataataatttgagaaaatg |
31815675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University