View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19201_low_1 (Length: 682)

Name: NF19201_low_1
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19201_low_1
NF19201_low_1
[»] chr4 (9 HSPs)
chr4 (12-662)||(35269543-35270194)
chr4 (493-555)||(35274818-35274880)
chr4 (505-573)||(35252754-35252822)
chr4 (508-576)||(35277094-35277162)
chr4 (505-573)||(35240502-35240570)
chr4 (382-426)||(35252622-35252666)
chr4 (508-574)||(35282681-35282747)
chr4 (209-295)||(35245641-35245725)
chr4 (382-426)||(35240370-35240414)
[»] chr8 (2 HSPs)
chr8 (506-572)||(27410580-27410646)
chr8 (506-572)||(37963949-37964015)
[»] chr3 (2 HSPs)
chr3 (506-572)||(27320075-27320141)
chr3 (506-572)||(27361806-27361872)


Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 12 - 662
Target Start/End: Original strand, 35269543 - 35270194
Alignment:
Q  12 atgaacaattatgcagttatgcggctcttccaatataccctcaaaaaatggttcatccttacagataaaactacttcagaattttatatcagtgatcaat 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35269543 atgaacagttatgcagttatgcggctcttccaatataccctcaaaaaatggttcatccttactgataaaactacttcagaattttatatcagtgatcaat 35269642  T
Q  112 gctcttaattttttcaaagtttactgaaggtatgatcaaacataatccaaaaactgatactctcctataatagaacgaatgagtatatttttacttgatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35269643 gctcttaattttttcaaagtttactgaaggtatgatcaaacataatccaaaaactgatactctcctataatagaacgaatgagtacatttttatttgatt 35269742  T
Q  212 acatcataatttcatgaacatttgcctcaagaaactaacacatttttatttgattacatctgcactactggactcaatcaacaggagnnnnnnnnn-ctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||    
T  35269743 acatcataatttcatgaacatttgcctcaagaaactaacacatttttatttgattacatctgcactactggactcaatcaacaggaattttttttttctc 35269842  T
Q  311 actacgtgactagctaagagacaaagacaataacttcaggggaggtatttacaccaaggaacaaagacaataacttcatctccatatcttcaccacagaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35269843 actacgtgactagctaagagacaaagacaataacttcaggggaggtatttacaccaaggaacaaagacaataacttcatctccatatcttcaccacagaa 35269942  T
Q  411 tcatcgctagctgatgtgatggtttcattttgagccactgctagtccagtaattgataaatcagaagcatgtgtactgctatgtgtttggccattctcaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35269943 tcatcgctagctgatgtgatggtttcattttgagccactgctagtccagtaattgataaatcagaagcatgtgtactgctatgtgtttggccattctcaa 35270042  T
Q  511 gaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaataagnnnnnnnacttgctgcatgacaatcaaacccaa 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  35270043 gaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaataagtttttttacttgctgcatgacaatcaaacccaa 35270142  T
Q  611 aaactttaagctgaaatacttgaaacataaaagtatttattactttcagagg 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35270143 aaactttaagctgaaatacttgaaacataaaagtatttattactttcagagg 35270194  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 35274818 - 35274880
Alignment:
Q  493 gtgtttggccattctcaagaatcaacaattccaggcactgtaataaattgtacacatattatt 555  Q
    ||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||| ||||    
T  35274818 gtgtttggccaatctcaagaatcaacatttccaagcactgcaataaattgtacacatagtatt 35274880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 35252754 - 35252822
Alignment:
Q  505 tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa 573  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||| ||||||||||| || |||||||||    
T  35252754 tctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa 35252822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 576
Target Start/End: Original strand, 35277094 - 35277162
Alignment:
Q  508 caagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaataa 576  Q
    ||||| |||||||||||| || ||| ||||||||||||||| |||||||||||||  | ||||||||||    
T  35277094 caagagtcaacaattccatgccctgcaataaattgtacacagattatttactttccatctatgcaataa 35277162  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 35240502 - 35240570
Alignment:
Q  505 tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa 573  Q
    |||||| | |||||||||||| |||||| ||||| |||| |||| ||||||||||| || |||||||||    
T  35240502 tctcaacagtcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa 35240570  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 35252622 - 35252666
Alignment:
Q  382 aacttcatctccatatcttcaccacagaatcatcgctagctgatg 426  Q
    |||||||| |||||||||||||||||||||||  |||||||||||    
T  35252622 aacttcatttccatatcttcaccacagaatcactgctagctgatg 35252666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 574
Target Start/End: Original strand, 35282681 - 35282747
Alignment:
Q  508 caagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaat 574  Q
    ||||| || ||||||||| |||||| ||||||||||||||| |||| || |||||  ||||||||||    
T  35282681 caagagtccacaattccatgcactgcaataaattgtacacagattagttgctttccatttatgcaat 35282747  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 35245641 - 35245725
Alignment:
Q  209 attacatcataatttcatgaacatttgcctcaagaaactaacacat-ttttatttgattacatctgcactactggactcaatcaacag 295  Q
    |||||||| ||||||||||||||||| | || |||||| || |||| |||||||||||||| |||    |||||| ||||||||||||    
T  35245641 attacatcgtaatttcatgaacatttccatcgagaaacaaagacatgttttatttgattacgtct---atactggcctcaatcaacag 35245725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 35240370 - 35240414
Alignment:
Q  382 aacttcatctccatatcttcaccacagaatcatcgctagctgatg 426  Q
    |||||||| ||||||||||||||||||||| |  |||||||||||    
T  35240370 aacttcatttccatatcttcaccacagaattactgctagctgatg 35240414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 572
Target Start/End: Original strand, 27410580 - 27410646
Alignment:
Q  506 ctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgca 572  Q
    |||||||||||| |||| || |||||| |||||| |  ||||| |||||||||||||| ||||||||    
T  27410580 ctcaagaatcaaaaatttcatgcactgcaataaacttgacacaaattatttactttctatttatgca 27410646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 37964015 - 37963949
Alignment:
Q  506 ctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgca 572  Q
    ||||||||| || ||||||| |||||| |||||| |  ||||| |||||||||||||| ||||||||    
T  37964015 ctcaagaataaaaaattccatgcactgcaataaactagacacaaattatttactttctatttatgca 37963949  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 27320141 - 27320075
Alignment:
Q  506 ctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgca 572  Q
    ||||||||| || ||||||| |||||| |||||| |  ||||| |||||||||||||| ||||||||    
T  27320141 ctcaagaataaaaaattccatgcactgcaataaactagacacaaattatttactttctatttatgca 27320075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 27361872 - 27361806
Alignment:
Q  506 ctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgca 572  Q
    ||||||||| || ||||||| |||||| |||||| |  ||||| |||||||||||||| ||||||||    
T  27361872 ctcaagaataaaaaattccatgcactgcaataaactagacacaaattatttactttctatttatgca 27361806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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