View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19201_low_11 (Length: 306)

Name: NF19201_low_11
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19201_low_11
NF19201_low_11
[»] chr3 (21 HSPs)
chr3 (86-291)||(34897734-34897940)
chr3 (3-108)||(1995468-1995573)
chr3 (23-97)||(52859272-52859346)
chr3 (3-93)||(10474400-10474489)
chr3 (2-52)||(2230006-2230056)
chr3 (6-56)||(33632849-33632899)
chr3 (4-90)||(44637967-44638052)
chr3 (2-91)||(27033674-27033763)
chr3 (3-91)||(51982549-51982636)
chr3 (6-57)||(54911681-54911732)
chr3 (1-91)||(19830394-19830484)
chr3 (1-91)||(24754679-24754769)
chr3 (1-91)||(24763676-24763766)
chr3 (1-91)||(29586358-29586447)
chr3 (1-91)||(43719910-43720000)
chr3 (24-93)||(30235416-30235484)
chr3 (3-86)||(47750274-47750356)
chr3 (6-48)||(25285843-25285885)
chr3 (10-52)||(34373862-34373904)
chr3 (2-52)||(46167416-46167466)
chr3 (1-98)||(48084841-48084939)
[»] chr6 (14 HSPs)
chr6 (1-99)||(2800566-2800664)
chr6 (1-99)||(7215807-7215905)
chr6 (1-100)||(4804470-4804569)
chr6 (2-91)||(17828532-17828620)
chr6 (1-89)||(23936275-23936365)
chr6 (2-91)||(227526-227616)
chr6 (1-91)||(7162106-7162196)
chr6 (56-98)||(9952993-9953035)
chr6 (1-91)||(21159332-21159422)
chr6 (1-49)||(27826560-27826608)
chr6 (1-52)||(12412659-12412710)
chr6 (1-52)||(13089751-13089802)
chr6 (10-48)||(9954332-9954370)
chr6 (34-90)||(29229149-29229204)
[»] chr1 (18 HSPs)
chr1 (1-99)||(39426232-39426330)
chr1 (1-100)||(32887735-32887833)
chr1 (11-97)||(35534741-35534825)
chr1 (2-95)||(26860010-26860102)
chr1 (1-91)||(26372274-26372362)
chr1 (2-91)||(50294026-50294115)
chr1 (5-52)||(7840681-7840728)
chr1 (1-57)||(24977262-24977318)
chr1 (1-56)||(5047379-5047434)
chr1 (1-52)||(12151789-12151840)
chr1 (4-98)||(18976260-18976355)
chr1 (4-91)||(32618826-32618911)
chr1 (36-90)||(49384627-49384680)
chr1 (1-91)||(50484408-50484498)
chr1 (34-98)||(1228496-1228560)
chr1 (24-100)||(12380831-12380907)
chr1 (24-100)||(12384898-12384974)
chr1 (15-91)||(45978041-45978117)
[»] chr2 (21 HSPs)
chr2 (2-97)||(30709133-30709228)
chr2 (1-98)||(4446852-4446949)
chr2 (23-98)||(30217517-30217592)
chr2 (1-100)||(19908802-19908899)
chr2 (29-99)||(30721564-30721632)
chr2 (1-74)||(15709790-15709862)
chr2 (3-99)||(31618724-31618818)
chr2 (6-74)||(36929743-36929810)
chr2 (24-98)||(2063399-2063472)
chr2 (6-95)||(30857638-30857726)
chr2 (1-91)||(13238703-13238793)
chr2 (25-91)||(22061433-22061498)
chr2 (6-56)||(35315286-35315336)
chr2 (1-91)||(35316847-35316937)
chr2 (4-57)||(34512022-34512075)
chr2 (3-56)||(38397105-38397158)
chr2 (1-48)||(28564914-28564961)
chr2 (3-98)||(35315526-35315620)
chr2 (1-55)||(21454494-21454547)
chr2 (48-97)||(6946335-6946384)
chr2 (24-56)||(19905926-19905958)
[»] chr8 (15 HSPs)
chr8 (1-97)||(42761735-42761831)
chr8 (2-100)||(21360299-21360400)
chr8 (1-74)||(18689513-18689585)
chr8 (3-74)||(24557162-24557232)
chr8 (1-56)||(17520404-17520459)
chr8 (1-52)||(30426671-30426722)
chr8 (2-91)||(6014217-6014307)
chr8 (1-91)||(28069741-28069831)
chr8 (1-91)||(36991378-36991468)
chr8 (23-93)||(42338008-42338077)
chr8 (1-56)||(26749546-26749601)
chr8 (10-101)||(37966397-37966487)
chr8 (36-102)||(20169125-20169190)
chr8 (3-52)||(40695249-40695298)
chr8 (2-54)||(36748492-36748543)
[»] chr7 (22 HSPs)
chr7 (9-98)||(47270580-47270668)
chr7 (4-60)||(29844316-29844372)
chr7 (4-91)||(4888492-4888579)
chr7 (1-52)||(12139349-12139400)
chr7 (1-96)||(40023215-40023309)
chr7 (4-90)||(989154-989239)
chr7 (1-91)||(7712331-7712420)
chr7 (3-56)||(32915980-32916033)
chr7 (1-98)||(39855770-39855866)
chr7 (1-52)||(25084730-25084781)
chr7 (1-99)||(33450528-33450627)
chr7 (1-91)||(9559017-9559107)
chr7 (1-91)||(44647986-44648076)
chr7 (23-91)||(5463867-5463934)
chr7 (6-54)||(24193620-24193668)
chr7 (1-56)||(47799898-47799953)
chr7 (1-87)||(7362590-7362676)
chr7 (4-98)||(7373892-7373985)
chr7 (36-102)||(44390835-44390900)
chr7 (2-52)||(45260429-45260479)
chr7 (12-69)||(18064588-18064643)
chr7 (3-91)||(16366542-16366630)
[»] chr5 (20 HSPs)
chr5 (1-91)||(29341017-29341106)
chr5 (1-91)||(11775815-11775905)
chr5 (1-91)||(35660572-35660662)
chr5 (1-91)||(43309130-43309220)
chr5 (1-90)||(4895699-4895788)
chr5 (27-93)||(9460597-9460662)
chr5 (1-91)||(18625384-18625474)
chr5 (1-91)||(32129580-32129670)
chr5 (1-91)||(37266753-37266843)
chr5 (3-56)||(18653385-18653438)
chr5 (3-56)||(31653059-31653112)
chr5 (1-56)||(10362012-10362067)
chr5 (1-52)||(14349825-14349876)
chr5 (10-89)||(39902446-39902525)
chr5 (2-48)||(14688597-14688643)
chr5 (64-98)||(21213953-21213987)
chr5 (3-56)||(3057152-3057205)
chr5 (3-56)||(27428879-27428932)
chr5 (1-74)||(34827214-34827287)
chr5 (27-55)||(2984389-2984417)
[»] chr4 (26 HSPs)
chr4 (28-99)||(15178628-15178699)
chr4 (1-96)||(36532647-36532741)
chr4 (4-90)||(5815267-5815350)
chr4 (1-91)||(19901881-19901971)
chr4 (1-91)||(23610664-23610754)
chr4 (1-95)||(1871299-1871392)
chr4 (1-91)||(5416429-5416518)
chr4 (1-98)||(56453777-56453873)
chr4 (28-93)||(33841766-33841830)
chr4 (6-94)||(42844148-42844235)
chr4 (1-100)||(56558301-56558400)
chr4 (1-91)||(3952133-3952223)
chr4 (3-56)||(23474135-23474188)
chr4 (1-57)||(5763159-5763215)
chr4 (1-96)||(47922324-47922420)
chr4 (1-52)||(24073638-24073689)
chr4 (1-48)||(30567923-30567970)
chr4 (24-91)||(39862562-39862629)
chr4 (1-56)||(48914516-48914571)
chr4 (1-56)||(56269074-56269129)
chr4 (1-91)||(18207003-18207093)
chr4 (1-91)||(34778443-34778533)
chr4 (20-57)||(5817976-5818013)
chr4 (3-93)||(13493296-13493387)
chr4 (3-56)||(50483554-50483607)
chr4 (1-85)||(36003216-36003299)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-74)||(58702-58774)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-52)||(7169-7220)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-91)||(208085-208175)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-52)||(16399-16450)
[»] scaffold0008 (1 HSPs)
scaffold0008 (2-52)||(9203-9253)
[»] scaffold0121 (1 HSPs)
scaffold0121 (7-56)||(29567-29616)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 86 - 291
Target Start/End: Complemental strand, 34897940 - 34897734
Alignment:
Q  86 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 185  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  186 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttcta-nnnnnnnnatcagctgatttgtccatttctacaacatttaagaaat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  285 ggagaga 291  Q
    |||||||    
T  34897740 ggagaga 34897734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 1995468 - 1995573
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 102  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| | |    
T  1995468 cacttattggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaagaggatcctaacccatgt 1995567  T
Q  103 caccca 108  Q
    ||||||    
T  1995568 caccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  23 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 97  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 10474489 - 10474400
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||| ||||||  ||| |||||||||| | ||||||  ||||||||||    
T  10474489 cacttaatagtaggatccattatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaatagagaggatcct 10474400  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 2230006 - 2230056
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  2230006 ccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 2230056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 33632849 - 33632899
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  33632849 ttaatagtaggatccactatctattttatgtgtctatctctctccaaattg 33632899  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 44637967 - 44638052
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    ||||||| |||||  ||| |||||||||||||||| |||||||||| ||||||  ||| |||||||||||| |||||||| ||||||    
T  44637967 acttaatagtagggtccactatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatgaggat 44638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 27033674 - 27033763
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| ||| ||||    
T  27033674 ccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatc 27033763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 51982636 - 51982549
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||||| ||| ||||| || ||||||||||| |||||||||||||||||||  | ||||||||||||||   ||||| ||||||||    
T  51982636 cacttaatgatagaacccactaactattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatggagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 54911681 - 54911732
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 57  Q
    |||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  54911681 ttaatggtaggacccactacctattttatgtctctatctctcttcaaattgt 54911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 19830484 - 19830394
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||||||||||||||  ||||||||| ||||||||| |||| |||| |||   |  ||||||||||||  |||||| ||||||||    
T  19830484 cccacttaatggtaggacccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttgccaaatggagaggatc 19830394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24754679 - 24754769
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24754679 cccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24763676 - 24763766
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||||||||  |  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24763676 cccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29586358 - 29586447
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||| ||| |||  | ||||||||||||||||||||||||||||||| ||  ||| |||||||||| |   ||||||||||||||    
T  29586358 cccacttaatagtaagacttactatctattttatgtgtctatctctctccaaactgcatac-tccatttattatgctaaatgaagaggatc 29586447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43720000 - 43719910
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  || |||||| ||||||||||||||||||| |||   |  |||||||||||| | ||||| ||||||||    
T  43720000 cccacttagtggtaggacccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatggagaggatc 43719910  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    ||||||||| | ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 47750356 - 47750274
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaaga 86  Q
    ||||||||| || ||| | ||||||||||| ||||| ||| ||||| |||||||| ||| | |||||||||| |||||||||||    
T  47750356 cacttaatgataagactctttatctattttttgtgtttatgtctcttcaaattgtatacct-catttattttgtcaaatgaaga 47750274  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 25285885 - 25285843
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctct 48  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||    
T  25285885 ttaatgataggatccactatctattttatgtgtctatctctct 25285843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 34373862 - 34373904
Alignment:
Q  10 tggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  34373862 tggtaggacccaccatctattttttgtgtctatctctctccaa 34373904  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 46167416 - 46167466
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    ||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  46167416 ccacttagtggtaggacccaccatatattttttgtgtctatctctctccaa 46167466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 48084841 - 48084939
Alignment:
Q  1 cccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    |||||||| |||| |||||||  ||||||| || |||||||||||||| ||||||||   |  || |||||||||| |||||| |||||||| ||||||    
T  48084841 cccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttattttagcaaatggagaggatcttaaccc 48084939  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2800664 - 2800566
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2800664 cccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatcctaacccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7215905 - 7215807
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  7215905 cccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggagaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4804470 - 4804569
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| |||||||| | ||||||    
T  4804470 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcacccct 4804569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 17828620 - 17828532
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||  ||| |||| ||||| || |||||| ||||||||    
T  17828620 ccacttaatagtagaatccactatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatgtagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23936275 - 23936365
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctc--caaattgtgtacttccatttattttatcaaatgaagagga 89  Q
    ||||||||||||||| | ||  |||| || |||||||||||||||||||  | |||||||||||| |||| | ||||||||||| ||||||    
T  23936275 cccacttaatggtagaatccgctatccatcttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 227616 - 227526
Alignment:
Q  2 ccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||| ||||||||||||  ||||||| || |||||||||||||||||||| ||   |  ||||||||||||| |||||| ||||||||    
T  227616 ccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttattttagcaaatggagaggatc 227526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7162106 - 7162196
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| | ||||||||||  ||||||||  ||||||||||||||||||| |||   |  |||||||||||||||||||| ||| ||||    
T  7162106 cccacttagtagtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatc 7162196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  56 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 21159422 - 21159332
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||||| ||||||||| |||   |  | ||||||||||| |||||| ||||||||    
T  21159422 cccacttagtggtaggacccaccatctattttttgtgtctatttctctccaacttgcaaaacttcatttattttaacaaatggagaggatc 21159332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27826560 - 27826608
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctc 49  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  27826560 cccacttagtggtaggacccaccatctattttttgtgtctatctctctc 27826608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12412659 - 12412710
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  12412659 cccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaa 12412710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13089802 - 13089751
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  |||||| || |||||||||||||||||||    
T  13089802 cccacttagtggtaggacccaccatctatattttgtgtctatctctctccaa 13089751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 9954370 - 9954332
Alignment:
Q  10 tggtaggacccattatctattttatgtgtctatctctct 48  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  9954370 tggtgggacccactatctattttatgtgtctatctctct 9954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 29229149 - 29229204
Alignment:
Q  34 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| |||||||    
T  29229149 tgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggat 29229204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39426232 - 39426330
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  39426232 cccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatggagatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32887833 - 32887735
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    |||| |||||||||||| ||| ||| |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  32887833 cccatttaatggtaggatccactatttattttatgtgtctatctttctctaaactgtgtact-ccatttattttatcaaatgaagaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 35534825 - 35534741
Alignment:
Q  11 ggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 97  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534825 ggtaggatccactatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 26860102 - 26860010
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 95  Q
    ||||||| || ||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||  ||| ||||||||    
T  26860102 ccacttagtgataggacctactatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaatagagatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26372274 - 26372362
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||||||||||||| | ||| ||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||  ||||||||    
T  26372274 cccacttaatggtaggatctattgtctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaattgagaggatc 26372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 50294115 - 50294026
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||||||||||||    
T  50294115 ccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgaagaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 7840728 - 7840681
Alignment:
Q  5 cttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  7840728 cttaatggtaggacccatcatctatttcttgtgtctatctctctccaa 7840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24977262 - 24977318
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 57  Q
    |||||||| |||||||| |||  ||||||||| |||||||||||||||| |||||||    
T  24977262 cccacttagtggtaggatccaccatctattttttgtgtctatctctctctaaattgt 24977318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5047434 - 5047379
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||| || |||||||| |||||||||||||||||  || ||||||||||||||||    
T  5047434 cccacatagtggtaggatccattatctattttatgcatcaatctctctccaaattg 5047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12151789 - 12151840
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  12151789 cccacttagtggtaggacccacaatctattttttgtgtctttctctctccaa 12151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 18976355 - 18976260
Alignment:
Q  4 acttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    |||||||||| ||| |||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| ||||||    
T  18976355 acttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaaccc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 32618826 - 32618911
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||| |||||| ||| ||||||||| || |||| ||||||||||||||||  ||| |||||||||| |  |||||||||||||||    
T  32618826 acttaatagtaggatccactatctattt-atatgtccatctctctccaaattggatac-tccatttattatgccaaatgaagaggatc 32618911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  36 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 50484408 - 50484498
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||| | |||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  50484408 cccacttagtggttgtacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 50484498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 1228560 - 1228496
Alignment:
Q  34 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||| |||||||||||||||   |  |||||||||||||  |||||||||||||| ||||||    
T  1228560 tgtgtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaaccc 1228496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 12380907 - 12380831
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12380907 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 12384974 - 12384898
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12384974 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12384898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 45978041 - 45978117
Alignment:
Q  15 ggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||  ||||||||| ||| ||||||||||||||| |||   |  |||||||||||||||||||  ||||||||    
T  45978041 ggacccaccatctattttttgtatctatctctctccaacttgcaaaactccatttattttatcaaatagagaggatc 45978117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 30709133 - 30709228
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 97  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||||||||    
T  30709133 ccacttagtggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatggagaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4446949 - 4446852
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||    
T  4446949 cccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggatactaaccc 4446852  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  23 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19908802 - 19908899
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    |||||||||  ||||||| || ||||||||||||||||||||||| ||||||||||  ||| |||||||||| |||||||||||||||||| | ||||||    
T  19908802 cccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgcatac-tccatttattatatcaaatgaagaggatctttacccct 19908899  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  29 ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15709790 - 15709862
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  15709790 cccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 15709862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 31618818 - 31618724
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    ||||||||| || ||| || |||||||||||| | ||||||| |||||||||||| ||| |||||||  ||||||||||| ||||||||||||||||    
T  31618818 cacttaatgatatgactcactatctattttatatatctatctttctccaaattgtatac-tccattt-ctttatcaaatggagaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 36929743 - 36929810
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    ||||||||||||| || || |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  36929743 ttaatggtaggacacactacctattttatgtgtctatctctctccaaattgcatac-tccatttatttt 36929810  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 2063399 - 2063472
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||||| |||||||||||||||||||||||   || || ||||||||| |||||||||||||||| ||||||    
T  2063399 atctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatgaagaggatcttaaccc 2063472  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 30857726 - 30857638
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 95  Q
    ||||| |||||| |||||||||||||| |||||||| |||||| ||||||   ||| |||||||||||| | ||||| ||||||||||||    
T  30857726 ttaatagtaggatccattatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatggagaggatcctaa 30857638  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13238703 - 13238793
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||  ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  13238703 cccacttggtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 13238793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  25 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 35315336 - 35315286
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||| ||| || |||||||||||||||||||||||||||||| |||||||    
T  35315336 ttaatagtaagatccattatctattttatgtgtctatctctcttcaaattg 35315286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35316847 - 35316937
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  35316847 cccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 35316937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 34512075 - 34512022
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 57  Q
    ||||||| |||  ||||| |||||||||||||||||||||| ||||||||||||    
T  34512075 acttaatagtataacccactatctattttatgtgtctatctttctccaaattgt 34512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 38397105 - 38397158
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||    
T  38397105 cacttaatagtagcacccactatctattttatttgtctatctctcttcaaattg 38397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28564914 - 28564961
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctct 48  Q
    |||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  28564914 cccacttagtggtaggacccaccatctattttttgtgtctatctctct 28564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 35315526 - 35315620
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||||| |||||||||  | ||||| | ||||| |||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||    
T  35315526 cacttaatgataggacccaccacctattgtttgtgtttatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaaccc 35315620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21454547 - 21454494
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaatt 55  Q
    |||||||||||||| ||||||  ||||||||| |||||||||||||||| |||||    
T  21454547 cccacttaatggtatgacccacaatctatttt-tgtgtctatctctctctaaatt 21454494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  48 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 97  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 19905926 - 19905958
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattg 56  Q
    |||||||||||||||||||||||||| ||||||    
T  19905926 atctattttatgtgtctatctctctcaaaattg 19905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 42761735 - 42761831
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 97  Q
    |||||| | |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  42761735 cccactgagtggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 21360299 - 21360400
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta----cttccatttattttatcaaatgaagaggatcctaacc 97  Q
    ||||||||||||| || | ||||||||| |||||||| |||||||||||||||| ||||    |||| ||||||||||||||||| ||||||||||||||    
T  21360299 ccacttaatggtatgatctattatctatattatgtgtttatctctctccaaattatgtatgtacttc-atttattttatcaaatggagaggatcctaacc 21360397  T
Q  98 cct 100  Q
    |||    
T  21360398 cct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18689513 - 18689585
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  18689513 cccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 18689585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 24557232 - 24557162
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||  | ||||||||||||||    
T  24557232 cacttaatggtaggacccattacctattttatgtctatatctctttccaaattgcat-cttccatttatttt 24557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17520404 - 17520459
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||||| ||||||| |  |||||||||||||||||||| |||||||||||||    
T  17520404 cccacttaatagtaggactcgctatctattttatgtgtctatatctctccaaattg 17520459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30426722 - 30426671
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  30426722 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 30426671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 6014217 - 6014307
Alignment:
Q  2 ccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||||||||||| || ||||||| || ||||||||||| |||||||||||   |  || |||||||||| |||||| ||||||||    
T  6014217 ccacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttattttagcaaatggagaggatc 6014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28069741 - 28069831
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  28069741 cccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 28069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 36991378 - 36991468
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||| ||||||||  | ||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  36991378 cccacttagtggtaggacccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 36991468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 42338077 - 42338008
Alignment:
Q  23 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    |||||||||||  ||| ||| |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  42338077 tatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatgaagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26749601 - 26749546
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  26749601 cccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 26749546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 37966487 - 37966397
Alignment:
Q  10 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctc 101  Q
    |||||||||| |  ||||||||| ||||| ||||||||| |||||||   | |||||||||||||  |||||| |||||||| |||||||||    
T  37966487 tggtaggacctacaatctattttttgtgtttatctctcttcaaattgcaaa-ttccatttattttgccaaatggagaggatcttaacccctc 37966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  36 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 102  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 40695298 - 40695249
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||| |||||||||| |  ||||||||| |||||||||||||||||||    
T  40695298 cacttagtggtaggacctaccatctattttttgtgtctatctctctccaa 40695249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 36748543 - 36748492
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaaat 54  Q
    |||||||||||||||||||  | |||||||| ||||||||||| |||||||||    
T  36748543 ccacttaatggtaggacccgctgtctatttt-tgtgtctatctatctccaaat 36748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 47270580 - 47270668
Alignment:
Q  9 atggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    |||||||| || ||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270580 atggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 29844316 - 29844372
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgta 60  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  29844316 acttagtggtagaacccactatctattttatgtgtctatctctctccaaattgtgta 29844372  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 4888492 - 4888579
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  4888492 acttagtggtaggacccactatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatggagaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12139349 - 12139400
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  12139349 cccacttaatggtaggacccaccatctattttttgtgtctatctctctccaa 12139400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40023309 - 40023215
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 96  Q
    |||||||||||||| || |||||| ||||||||| ||||||||| |||||||||||| ||| ||  |||||||| ||||||  ||||||| |||||    
T  40023309 cccacttaatggtaagatccattaactattttatatgtctatctttctccaaattgtatac-tcgttttattttttcaaatagagaggattctaac 40023215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 989154 - 989239
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    ||||| |||||||||||| ||| |||||| |||||||||||||||||||||||   || |||||||| ||| ||||||| |||||||    
T  989154 acttagtggtaggacccactatatattttttgtgtctatctctctccaaattgcaaac-tccatttaatttgtcaaatggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7712420 - 7712331
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||||||||||| || ||||||| |||||| |||||||||||| ||||||  | ||||||||||||||   ||||| ||||||||    
T  7712420 cccacttaatggtaggactcactatctatcttatgtctctatctctctctaaattgcat-cttccatttatttttataaatggagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 32915980 - 32916033
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||    
T  32915980 cacttaatggtaggacccactatttattttttgtgtctatctctcttcaaattg 32916033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 39855866 - 39855770
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    |||||||| |||||||||| |  |||| |||||||||||||||||||||||||||    || |||||||| ||| |||||||||||| ||| ||||||    
T  39855866 cccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattacaaac-tccatttaatttgtcaaatgaagagaatcttaaccc 39855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25084781 - 25084730
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  25084781 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaa 25084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33450528 - 33450627
Alignment:
Q  1 cccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    |||||||| |||| |||||||  ||||||| || |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| |||||||    
T  33450528 cccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9559107 - 9559017
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  9559107 cccacttagtggtaggacccaccatctattttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 9559017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44647986 - 44648076
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||| ||| |||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  44647986 cccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 5463934 - 5463867
Alignment:
Q  23 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||||||||| ||| |||||||||||||| ||| |  ||||||| ||||||||| ||||||||    
T  5463934 tatctattttatgtgtttatatctctccaaattgtatac-tatatttattatatcaaatggagaggatc 5463867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 24193620 - 24193668
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaat 54  Q
    ||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  24193620 ttaatggtaagactcattgtctattttatgtgtctatctctcttcaaat 24193668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47799953 - 47799898
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||| || |||||||||| |  |||||| |||||||||||||||||||||||    
T  47799953 cccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattg 47799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7362590 - 7362676
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagag 87  Q
    |||| ||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||    
T  7362590 cccatttagtggtacgacccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatggagag 7362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 7373892 - 7373985
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||| ||| |||||| | |||||||| |||  ||||||||||||||||||  || | |||||||||||| | || |||||||||| ||||||    
T  7373892 acttaatagtaagacccactgtctattttttgtacctatctctctccaaattgcata-tcccatttattttaaccaacgaagaggatcttaaccc 7373985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  36 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 102  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 45260479 - 45260429
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    ||||||| |||||||| |||  ||||||||| |||||||||||||||||||    
T  45260479 ccacttagtggtaggatccacaatctattttttgtgtctatctctctccaa 45260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 18064588 - 18064643
Alignment:
Q  12 gtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccattt 69  Q
    ||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18064588 gtaggactcactgtctattttatgtgtctatctctctcc-aattgtgta-ttccattt 18064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 16366542 - 16366630
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||| |||||||| |||  ||||||||  | ||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  16366542 cacttagtggtaggatccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 16366630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29341017 - 29341106
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||  ||| |||||||||| || |||||| ||||||||    
T  29341017 cccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggatc 29341106  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11775815 - 11775905
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||||||| |||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  11775815 cccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 11775905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35660662 - 35660572
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  35660662 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 35660572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43309130 - 43309220
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||| ||||||||| || ||| |||||||||| | ||||||||||||||||| |||   |  ||||||||||||||||||| |||||||||    
T  43309130 cccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataaagaggatc 43309220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4895788 - 4895699
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  ||||| ||||||||    
T  4895788 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaataaagaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  27 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    |||| |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18625474 - 18625384
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||| ||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  18625474 cccacttagtggtaggacccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatc 18625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32129670 - 32129580
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  |||||||||  |||||||||||||||||| || |  |  ||||||||||||  |||||| ||||||||    
T  32129670 cccacttagtggtaggacccaccatctatttttggtgtctatctctctccaacttataaaactccatttattttgccaaatggagaggatc 32129580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 37266753 - 37266843
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  37266753 cccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 37266843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 18653385 - 18653438
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||||||||| || || |||||||||| ||||||||||||||| |||||||    
T  18653385 cacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattg 18653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 31653059 - 31653112
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||    
T  31653059 cacttaatagtaggactcgctatctattttatgtgtttatctctctccaaattg 31653112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10362067 - 10362012
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||||||||||||| ||| || | ||||||||| ||||||||||||| |||||    
T  10362067 cccacttaatggtaggatccactaccaattttatgtctctatctctctcctaattg 10362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14349825 - 14349876
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||| ||||||| |||||||||||    
T  14349825 cccacttagtggtaggacccaccatctattttttgtgtctgtctctctccaa 14349876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 39902446 - 39902525
Alignment:
Q  10 tggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagagga 89  Q
    ||||||||||||  ||||||||  ||||| ||||||||||||| ||||  |  |||||||||||| ||||||| ||||||    
T  39902446 tggtaggacccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatggagagga 39902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 14688597 - 14688643
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctct 48  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  14688597 ccacttaatggtagaatccaatatctattttatgtgtcgatctctct 14688643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  64 ccatttattttatcaaatgaagaggatcctaaccc 98  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 3057205 - 3057152
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||||||||||| |||  ||||||||| ||||| ||||||| |||||||||    
T  3057205 cacttaatggtaggatccaccatctattttttgtgtttatctctatccaaattg 3057152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 27428932 - 27428879
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||||||||||  ||  ||||||||| ||||||||||||| |||||||||    
T  27428932 cacttaatggtaggattcaccatctattttttgtgtctatctctttccaaattg 27428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34827214 - 34827287
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    |||||||| |||||||| |||  ||||||||| | ||||||||||||||||| |||  ||  ||||||||||||    
T  34827214 cccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttatttt 34827287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 2984417 - 2984389
Alignment:
Q  27 tattttatgtgtctatctctctccaaatt 55  Q
    |||||||||||||||||||||||||||||    
T  2984417 tattttatgtgtctatctctctccaaatt 2984389  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  28 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 99  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36532647 - 36532741
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 96  Q
    |||||| |||| ||||| ||| ||| ||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||||    
T  36532647 cccactgaatgataggatccactatttattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatcttaac 36532741  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 5815350 - 5815267
Alignment:
Q  4 acttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 90  Q
    ||||| ||||| |||||||||| ||||||  ||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815350 acttagtggtatgacccattatatatttt--gtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 19901971 - 19901881
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  19901971 cccacttagtggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 19901881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23610664 - 23610754
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||| ||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||||||||||| ||||||||    
T  23610664 cccacttagtggtatgacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagaggatc 23610754  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1871299 - 1871392
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 95  Q
    |||||||| | |||||| ||| ||||||| || | |||||||||||||||||||||  ||| |||||||||||| ||||||  ||||||||||||    
T  1871299 cccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaattgagaggatcctaa 1871392  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5416518 - 5416429
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  5416518 cccacttagtggtaggacccacaatctatttt-tgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 5416429  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 56453873 - 56453777
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattt-tatcaaatgaagaggatcctaaccc 98  Q
    ||||||||||| |||||||||  | ||||||| |||||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||||| ||||||    
T  56453873 cccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaatggagaggatcttaaccc 56453777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  28 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 42844235 - 42844148
Alignment:
Q  6 ttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 94  Q
    ||||| ||||||| || | |||||||||||||||||||| |||||||||||| ||  || ||||||||||| | ||| |||||||||||    
T  42844235 ttaatagtaggacacactctctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatggagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 56558301 - 56558400
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 100  Q
    |||||||| || |||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  56558301 cccacttagtgataggacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 56558400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3952223 - 3952133
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| | ||||||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  3952223 cccacttagtggtaggacccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatggagaggatc 3952133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 23474135 - 23474188
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||    
T  23474135 cactcaatagtaggacccaccatctattttatgtgtctatctctccccaaattg 23474188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5763215 - 5763159
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgt 57  Q
    |||||||| ||||||||||||  ||||||||| ||| ||||||||||||||| ||||    
T  5763215 cccacttagtggtaggacccaccatctattttttgtttctatctctctccaacttgt 5763159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 47922420 - 47922324
Alignment:
Q  1 cccacttaatggtaggacccattatctatt-ttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 96  Q
    |||||||| ||||||||||||  ||||||| || ||||||||| |||||||||||||   |  || |||||||||| |||||| |||||||| ||||    
T  47922420 cccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaac 47922324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24073638 - 24073689
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  ||||||||  |||||||||||||||||||    
T  24073638 cccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaa 24073689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30567923 - 30567970
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctct 48  Q
    |||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  30567923 cccacttagtggtaggacccaccatctattttttgtgtctatctctct 30567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 39862562 - 39862629
Alignment:
Q  24 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    ||||||||| |||||||||||||||| || |||   | ||| ||||||||||||||||| ||||||||    
T  39862562 atctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatggagaggatc 39862629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48914571 - 48914516
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||| ||| |||||||||  |||||||||||||||| ||||||||| ||||||    
T  48914571 cccactttatgataggacccacaatctattttatgtgtcgatctctctctaaattg 48914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 56269129 - 56269074
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    |||||||| ||||||||||||  |  |||||| |||||||||||||||||||||||    
T  56269129 cccacttagtggtaggacccaccacttattttttgtgtctatctctctccaaattg 56269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18207093 - 18207003
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| | |||||||||||||| || |||   |  | |||||||||| ||||||| ||||||||    
T  18207093 cccacttagtggtaggacccaccatctattttttttgtctatctctctctaacttgcaaaactacatttattttgtcaaatggagaggatc 18207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34778443 - 34778533
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| |||||||| |||  ||||||||| ||||||||||||||| ||| |||   |  ||||||||||||  |||||| ||||||||    
T  34778443 cccacttagtggtaggatccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatggagaggatc 34778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5817976 - 5818013
Alignment:
Q  20 cattatctattttatgtgtctatctctctccaaattgt 57  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5817976 cattatctcttttttgtgtctatctctctccaaattgt 5818013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 13493296 - 13493387
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtcta--tctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 93  Q
    |||||| |||| ||| ||| ||||||||||| |||||||  |||||||| ||||||  ||| |||||||||||| ||||||  ||||||||||    
T  13493296 cacttagtggtgggatccactatctattttacgtgtctatctctctctctaaattgcatac-tccatttattttgtcaaatagagaggatcct 13493387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 50483607 - 50483554
Alignment:
Q  3 cacttaatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||||||||| ||| | | ||||||||||| |||||||||| |||||||||||    
T  50483607 cacttaatggtgggatcgaatatctattttacgtgtctatctgtctccaaattg 50483554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 36003299 - 36003216
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaag 85  Q
    |||||||||||  | |||||| ||| |||||| ||| | |||||||||||||||||  ||||| ||||||||||  |||||||||    
T  36003299 cccacttaatgacatgacccaatatttattttttgtatttatctctctccaaattgcatactt-catttattttgacaaatgaag 36003216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 58702 - 58774
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 74  Q
    ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||  || |||||||||||||    
T  58702 cccacttaatggtaggatccactatctattttatatgtttatctctctccaaattgcata-ttccatttatttt 58774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7169 - 7220
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||||| ||||||||||  ||||||||| |||||||||||||||||||    
T  7169 cccacttaatagtaggacccaccatctattttttgtgtctatctctctccaa 7220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 208085 - 208175
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 91  Q
    |||||||| ||||||||||||  ||||||||| ||||| ||||||||||||| |||   |  ||||||||||||  |||||| ||||||||    
T  208085 cccacttagtggtaggacccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatggagaggatc 208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16450 - 16399
Alignment:
Q  1 cccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    |||||||| ||||||||||||  || |||||| |||||||||||||||||||    
T  16450 cccacttagtggtaggacccaccatttattttttgtgtctatctctctccaa 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 9253 - 9203
Alignment:
Q  2 ccacttaatggtaggacccattatctattttatgtgtctatctctctccaa 52  Q
    ||||||| |||| |||||||  ||||||||| |||||||||||||||||||    
T  9253 ccacttagtggttggacccaccatctattttctgtgtctatctctctccaa 9203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 29616 - 29567
Alignment:
Q  7 taatggtaggacccattatctattttatgtgtctatctctctccaaattg 56  Q
    ||||| ||||||| |||| ||||||||||| |||||||||||| ||||||    
T  29616 taatgctaggacctattacctattttatgtctctatctctctctaaattg 29567  T

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