View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_16 (Length: 259)
Name: NF19201_low_16
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 24578622 - 24578852
Alignment:
| Q |
24 |
aacacacaaaaacctaaaaaacttcctaaagcatacatgtctccatttcctatgaagaccactgcaaaagtatgatttgtcatgagcttattttatatgt |
123 |
Q |
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| T |
24578622 |
aacacacaaaaacctaaaaaacttcctaaagcatacatgtctccatttcctatgaagaccacttcaaaagtatgatttgtcatgagcttattttatatat |
24578721 |
T |
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| Q |
124 |
atcatgctattaacatacacacaaaaacaaaactcaaagtgtcaccaagaaaaagtgctccaaatcaggaggtacaaagaatgaaagtggtgaccttctc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24578722 |
atcatgctattaacatacacacaaaaacaaaactcaaagtgtcaccaagaaaaagtgctccaaatcaggaggtacaaagaatgaaagtggtgaccttctc |
24578821 |
T |
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| Q |
224 |
aaagaacaatttgaaactaccctttgcttct |
254 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
24578822 |
aaagaacaatttgaaactaccctttgtttct |
24578852 |
T |
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