View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_20 (Length: 231)
Name: NF19201_low_20
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 1164728 - 1164579
Alignment:
| Q |
41 |
acaatggtggatacgatggcactcataattctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattgattttatgtatgagcttttggct |
140 |
Q |
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| T |
1164728 |
acaatggtgggcacaatggtactcataattctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggct |
1164629 |
T |
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| Q |
141 |
ttagacacattgtttcacttccactagttaagtttcatctttagttgctt |
190 |
Q |
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| T |
1164628 |
ttagacacatggtttcacttccacaagttaaatttcatctttagttgctt |
1164579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 1148561 - 1148456
Alignment:
| Q |
41 |
acaatggtggatacgatggcactcataattctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattgattttatgtatgagcttttggct |
140 |
Q |
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| T |
1148561 |
acaatggtgggcacaatggtactcataattctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggct |
1148462 |
T |
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| Q |
141 |
ttagac |
146 |
Q |
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|||||| |
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| T |
1148461 |
ttagac |
1148456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 1172138 - 1171962
Alignment:
| Q |
19 |
aatggtgggaacaacggtgtatacaatggtggatacgatggcactcataattctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattga |
118 |
Q |
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| T |
1172138 |
aatggcgggcacaatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcattttagtgtctccacattga |
1172039 |
T |
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| Q |
119 |
ttttatgtatgagcttttggctttagacaca-ttgtttcacttccactagttaagtttcatctttagttgcttttat |
194 |
Q |
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| T |
1172038 |
ttttgtgtttgagtttttggctttaaacacatttgtttcacttctagtagtttagtttcatttttagttgctattat |
1171962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 1181387 - 1181207
Alignment:
| Q |
18 |
caatggtgggaacaacggtgtatacaatggtggatacgatggcactcataattctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattg |
117 |
Q |
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|||||| ||| |||| |||| ||| |||||||| ||| |||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||| ||| |
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| T |
1181387 |
caatggcgggcacaatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcatttttgtgtctcaactttg |
1181288 |
T |
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| Q |
118 |
attttatgtatgagcttttggctttagacaca-ttgtttcacttccactag---ttaagtttcatctttagttgcttttat |
194 |
Q |
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| T |
1181287 |
attttgtgtttgagcttttggctttaaacacatttgttttacttctagtagtaattaagtttcatttttagttgctattat |
1181207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 1137112 - 1137003
Alignment:
| Q |
69 |
ttctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattgattttatgtatgagcttttggctttagacacattgtttcacttccactagt |
168 |
Q |
| |
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||||||| || ||| ||| |||| |||| || ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
1137112 |
ttctgcaccatcattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagt |
1137013 |
T |
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| Q |
169 |
taagtttcat |
178 |
Q |
| |
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| ||| |||| |
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| T |
1137012 |
ttagtatcat |
1137003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 1141766 - 1141666
Alignment:
| Q |
69 |
ttctgcaacaacatcatcagcagtgcctcatttttgtgtttcaacattgattttatgtatgagcttttggctttagacacattgtttcacttccactagt |
168 |
Q |
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||||||| || ||| ||| |||| |||| || ||||||| |||||||| ||||||||| ||||||||||| | || || |||||||||||||||||||| |
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| T |
1141766 |
ttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccactagt |
1141667 |
T |
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| Q |
169 |
t |
169 |
Q |
| |
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| |
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| T |
1141666 |
t |
1141666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 1145266 - 1145183
Alignment:
| Q |
95 |
ctcatttttgtgtttcaacattgattttatgtatgagcttttggctttagacacattgtttcacttccactagttaagtttcat |
178 |
Q |
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|||||||| |||| |||||||| | ||||| ||||||||||||||||| |||||| ||||||||||| || |||||| |||| |
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| T |
1145266 |
ctcattttggtgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttccattaattaagtatcat |
1145183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 1160124 - 1160030
Alignment:
| Q |
96 |
tcatttttgtgtttcaacattgattttatgtatgagcttttggctttagacacattgtttcacttccactagttaagtttcatctttagttgctt |
190 |
Q |
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|||| ||||||| ||||||| ||||||||| |||| |||| |||||| || |||||| |||||||||| |||||| |||| ||||||||||| |
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| T |
1160124 |
tcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtttagttgctt |
1160030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 1133522 - 1133442
Alignment:
| Q |
98 |
atttttgtgtttcaacattgattttatgtatgagcttttggctttagacacattgtttcacttccactagttaagtttcat |
178 |
Q |
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| T |
1133522 |
atttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagttaagtatcat |
1133442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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