View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_21 (Length: 230)
Name: NF19201_low_21
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 36769656 - 36769441
Alignment:
| Q |
3 |
cttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaagagttaaattcaattactctccacttgtctaagatt |
102 |
Q |
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| T |
36769656 |
cttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaagagttaaattcaattgctctccactggtctgagatt |
36769557 |
T |
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| Q |
103 |
gaacaactacatattgtacattgtttaagactccatctgcagtgatatcattagcagaaatttctcctccctcaatttcatgatctgcaaccaattgagc |
202 |
Q |
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| T |
36769556 |
gaacagctacatattgtacattgtttacgactccatctgcagtgatatcattagcagaaatttctctttcctcaatatcatgatctgcaaccaattgagc |
36769457 |
T |
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| Q |
203 |
catatgcatgtcattc |
218 |
Q |
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| T |
36769456 |
catatgcatgtcattc |
36769441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 31319636 - 31319573
Alignment:
| Q |
4 |
ttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaag |
67 |
Q |
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| T |
31319636 |
ttggcttagcctcccctatgacatgcttagaaccactttcaagcaattcaaatgagttgtgaag |
31319573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 26378626 - 26378700
Alignment:
| Q |
5 |
tggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaagagttaaattcaa |
79 |
Q |
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| T |
26378626 |
tggcttagcctcccctgtgacatgttcagcgtcattttcaagcaactcaaatgagttgtgaagagtgatattcaa |
26378700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 17351289 - 17351345
Alignment:
| Q |
8 |
cttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtg |
64 |
Q |
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||||||||||||||| ||| || || | ||||||||||| ||||||||||| ||||| |
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| T |
17351289 |
cttagcctcccctataacaggctcaaaatcattttcaagtaactcaaatgagttgtg |
17351345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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