View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_5 (Length: 396)
Name: NF19201_low_5
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 72 - 390
Target Start/End: Original strand, 20670549 - 20670867
Alignment:
| Q |
72 |
tccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatctca |
171 |
Q |
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| T |
20670549 |
tccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatctcc |
20670648 |
T |
|
| Q |
172 |
catccatcacttagcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaac |
271 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670649 |
catccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaac |
20670748 |
T |
|
| Q |
272 |
gtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaa |
371 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670749 |
gtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaa |
20670848 |
T |
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| Q |
372 |
tttcacccttgatgatgtc |
390 |
Q |
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||||||||||||||||||| |
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| T |
20670849 |
tttcacccttgatgatgtc |
20670867 |
T |
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