View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_6 (Length: 391)
Name: NF19201_low_6
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 39210326 - 39210687
Alignment:
| Q |
12 |
acagagtagttgtgaaagaagcttcgaaaaacattgattacaacgacgaaccatcgatcactaaagtgagtttgatgtagcgtcatgaagagcaggccac |
111 |
Q |
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| T |
39210326 |
acagagtagttgtgaaagaagcttcgaaaaacattgattacaacgacgaaccatcgatcactaaagtgagtttgatgtaacgtcatgaagagcaggccac |
39210425 |
T |
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| Q |
112 |
gatgagcgtggtgaggctcgacactgatgatcgatagggatgttaatccacaagggcgatcacactacccttttctggatctgcatcttgccgagagaaa |
211 |
Q |
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| T |
39210426 |
gatgagcgtggtgaggctcgacaccgatgattgatagggatgttaatccacaagggcgatcacactacccttttctggatctgcatcttgccgagagaaa |
39210525 |
T |
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| Q |
212 |
ttgaatttgggtgggggaaggatagcaacgttcgatgtttaagagagaaattgattgnnnnnnncaatgagagagaagtgagaaagagacttttatgtct |
311 |
Q |
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| T |
39210526 |
ttgaatttgagtgggggaaggatagcaacgttcgatgtttaagagagaaattggttgtttttttcaatgagagagaagtgagaaagagacttttatgtct |
39210625 |
T |
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| Q |
312 |
ctcttatatgtatgtattatcaacaaagaatcaacaattcttaataatatattggtaagacc |
373 |
Q |
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| T |
39210626 |
ctcttatatgtatgtattatcaacaaagaatcaacaattcttaataatatattggtaagacc |
39210687 |
T |
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