View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19201_low_8 (Length: 335)
Name: NF19201_low_8
Description: NF19201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19201_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 49 - 321
Target Start/End: Original strand, 14541689 - 14541959
Alignment:
| Q |
49 |
aaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttgttgtccttaagagtccatatcactaatatgtcggcattcc |
148 |
Q |
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| T |
14541689 |
aaatacaacacatttaactaattttagcaaccttcccttcaaagaccatcttattccttgctctcct-aagagtccatatcactgatatggctgcattc- |
14541786 |
T |
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| Q |
149 |
tccgcggcttccaaaccaaacacacaaggaataacttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaa |
248 |
Q |
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| T |
14541787 |
tatgcggcttccgaaccaaacacacaaggaattacctcacaattagctacaatacaccttcgttttaaggccttcgtcgaagcaattcagccctgcagaa |
14541886 |
T |
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| Q |
249 |
ctcatcttccatgaatgatgaattttgatggaaccgatgaattccacaactatttatagactttcttgtttct |
321 |
Q |
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| T |
14541887 |
cttgccatccacgaatgatgaatttcaatggaaccgatgaattccataactatttataggctttctcgtttct |
14541959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 14540276 - 14540415
Alignment:
| Q |
182 |
acttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaactcatcttccatgaatgatgaattttgatggaa |
281 |
Q |
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| T |
14540276 |
acttcacaattagctacaatacaccttcgttttaaggctttcgtcgaagcaattctgccttgcagaactcatcttccatgaatgatgaattttgatggaa |
14540375 |
T |
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| Q |
282 |
ccgatgaattccacaactatttatagactttcttgtttct |
321 |
Q |
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| T |
14540376 |
ccgatgaattccacaactatttataggctttcttatttct |
14540415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 14540169 - 14540278
Alignment:
| Q |
22 |
ggggtaccaccaaacccatcaaaatcgaaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttgttgtccttaagag |
121 |
Q |
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| T |
14540169 |
ggggtaccaccaaacccatcaaaatcgaaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttattgtcc-taagag |
14540267 |
T |
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| Q |
122 |
tccatatcact |
132 |
Q |
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| T |
14540268 |
tccatatcact |
14540278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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