View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19202_high_2 (Length: 394)
Name: NF19202_high_2
Description: NF19202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19202_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 45547735 - 45547376
Alignment:
| Q |
17 |
cagatgattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacga |
116 |
Q |
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| T |
45547735 |
cagatgattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacga |
45547636 |
T |
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| Q |
117 |
gaaatcgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45547635 |
gaaatcgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagaga |
45547536 |
T |
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| Q |
217 |
tattatcgttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaa |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547535 |
tattatcattagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaa |
45547436 |
T |
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| Q |
317 |
gatggtttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45547435 |
gatggtttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact |
45547376 |
T |
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